miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 18616 0.66 0.793558
Target:  5'- aCCGCCcagGCCC-ACGUUUC-CCCCg -3'
miRNA:   3'- aGGCGGagaCGGGcUGUAGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 146903 0.66 0.793558
Target:  5'- -aCGCCUC-GCCC-ACAg--CUCCCCg -3'
miRNA:   3'- agGCGGAGaCGGGcUGUaggGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 153285 0.66 0.793558
Target:  5'- gCCGCCg--GCgCCG-CG-CCCgUCCCCg -3'
miRNA:   3'- aGGCGGagaCG-GGCuGUaGGG-AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 185093 0.66 0.785045
Target:  5'- gCCGUCUCUucCCCGuC-UUCCUCCUCu -3'
miRNA:   3'- aGGCGGAGAc-GGGCuGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 55153 0.66 0.785045
Target:  5'- aCCGCCguu-CCCGGCccUCuUCUCCCCg -3'
miRNA:   3'- aGGCGGagacGGGCUGu-AG-GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 9559 0.66 0.785045
Target:  5'- gCCGUCUCU-CCCGAgAUCCgUuucgacgaUCCCg -3'
miRNA:   3'- aGGCGGAGAcGGGCUgUAGGgA--------GGGG- -5'
16002 5' -61.5 NC_004065.1 + 93550 0.66 0.784187
Target:  5'- aCCgGCCUCggcucCCCGGCuuUCCggcucggCUCCCCa -3'
miRNA:   3'- aGG-CGGAGac---GGGCUGu-AGG-------GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 8042 0.66 0.776412
Target:  5'- aUCGUCUUcggGuCCCGACGUCgCCUaCCUCa -3'
miRNA:   3'- aGGCGGAGa--C-GGGCUGUAG-GGA-GGGG- -5'
16002 5' -61.5 NC_004065.1 + 86747 0.66 0.776412
Target:  5'- gCCGCCUCgGCCCuugaagcuGCcgCCC-CCgCCg -3'
miRNA:   3'- aGGCGGAGaCGGGc-------UGuaGGGaGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 191612 0.66 0.776412
Target:  5'- -aCGCCUCU-CCCGcgaaGUCCgugUCCCCg -3'
miRNA:   3'- agGCGGAGAcGGGCug--UAGGg--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 149247 0.66 0.776412
Target:  5'- gCCGCCgUC-GCCUG-C-UCCCUCUCUa -3'
miRNA:   3'- aGGCGG-AGaCGGGCuGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 100445 0.66 0.776412
Target:  5'- gCCGCUUCU--CCGGCAUCUC-CaCCCg -3'
miRNA:   3'- aGGCGGAGAcgGGCUGUAGGGaG-GGG- -5'
16002 5' -61.5 NC_004065.1 + 90181 0.66 0.767667
Target:  5'- cUCCGCCgUC-GCCCG-CcUCCCgggaCUCCa -3'
miRNA:   3'- -AGGCGG-AGaCGGGCuGuAGGGa---GGGG- -5'
16002 5' -61.5 NC_004065.1 + 149887 0.66 0.767667
Target:  5'- gCCGCCUCUGCCgCGcCAgggacgaCCUgCaCCu -3'
miRNA:   3'- aGGCGGAGACGG-GCuGUag-----GGAgG-GG- -5'
16002 5' -61.5 NC_004065.1 + 43321 0.66 0.758817
Target:  5'- gUCGUCaUCUgGCCCGGCGgggacgCCCcacgcgccgcgUCCCCg -3'
miRNA:   3'- aGGCGG-AGA-CGGGCUGUa-----GGG-----------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 198368 0.66 0.758817
Target:  5'- cUUCGCCaggaaCaGCgCCGACGUCCCguagCCCg -3'
miRNA:   3'- -AGGCGGa----GaCG-GGCUGUAGGGa---GGGg -5'
16002 5' -61.5 NC_004065.1 + 68203 0.66 0.758817
Target:  5'- gUCCGCC-C-GCCCGucCGUCCgUCCa- -3'
miRNA:   3'- -AGGCGGaGaCGGGCu-GUAGGgAGGgg -5'
16002 5' -61.5 NC_004065.1 + 190406 0.66 0.758817
Target:  5'- cUCC-CCUCggaggGCCCGguaGCAcuuugacucUCCC-CCCCg -3'
miRNA:   3'- -AGGcGGAGa----CGGGC---UGU---------AGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 169459 0.67 0.749869
Target:  5'- cCCGCCgugugCgGaCCCGGCGUCUCcgucgUCUCCg -3'
miRNA:   3'- aGGCGGa----GaC-GGGCUGUAGGG-----AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 135302 0.67 0.74897
Target:  5'- cUCCGCCgccgacuUCgGCCCGcucgaGCcgCCCUCCa- -3'
miRNA:   3'- -AGGCGG-------AGaCGGGC-----UGuaGGGAGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.