miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 122919 0.67 0.740832
Target:  5'- aCCGCgccgaUCaGCCgCGACAgcuUCCCcacgUCCCCg -3'
miRNA:   3'- aGGCGg----AGaCGG-GCUGU---AGGG----AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 171266 0.67 0.740832
Target:  5'- gUCGCCUCUuuccaaucggGCCCGcCGUCUCUagUCCUg -3'
miRNA:   3'- aGGCGGAGA----------CGGGCuGUAGGGA--GGGG- -5'
16002 5' -61.5 NC_004065.1 + 138264 0.67 0.740832
Target:  5'- cUCCaGCCUC-GCCCc-CGUCgCUCCCg -3'
miRNA:   3'- -AGG-CGGAGaCGGGcuGUAGgGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 93154 0.67 0.739924
Target:  5'- aCCaGCUUCUGacgcugaCCgCGGCAUCCgUCCCg -3'
miRNA:   3'- aGG-CGGAGAC-------GG-GCUGUAGGgAGGGg -5'
16002 5' -61.5 NC_004065.1 + 45241 0.67 0.739924
Target:  5'- gUCCuCCUCcGCCCGuCGcgucgucUCCUUCUCCu -3'
miRNA:   3'- -AGGcGGAGaCGGGCuGU-------AGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 163197 0.67 0.739924
Target:  5'- cUCCGCCUCguaCCGgaaaucaacggacGCGUCCCUCggacgUCCg -3'
miRNA:   3'- -AGGCGGAGacgGGC-------------UGUAGGGAG-----GGG- -5'
16002 5' -61.5 NC_004065.1 + 120349 0.67 0.737194
Target:  5'- cUCCaCCUCgggguacgucggcGCCUGACGUUCgCUCUCCg -3'
miRNA:   3'- -AGGcGGAGa------------CGGGCUGUAGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 150799 0.67 0.731712
Target:  5'- aUCCGCUggUGCgCGAUGUCCaggcucaCCCCg -3'
miRNA:   3'- -AGGCGGagACGgGCUGUAGGga-----GGGG- -5'
16002 5' -61.5 NC_004065.1 + 29477 0.67 0.731712
Target:  5'- cCCGCUgCcGCCCGuCG-CCCUCgCCa -3'
miRNA:   3'- aGGCGGaGaCGGGCuGUaGGGAGgGG- -5'
16002 5' -61.5 NC_004065.1 + 53661 0.67 0.722517
Target:  5'- -gCGCCUC-GUCCGcaaggacacCAUCUCUCCCUg -3'
miRNA:   3'- agGCGGAGaCGGGCu--------GUAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93643 0.67 0.722517
Target:  5'- aCCGaCCUCggaucCCCG-CA-CCCUUCCCg -3'
miRNA:   3'- aGGC-GGAGac---GGGCuGUaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 166989 0.67 0.722517
Target:  5'- gUCGCCUCgcgcGCCgGACAgCUCUCCg- -3'
miRNA:   3'- aGGCGGAGa---CGGgCUGUaGGGAGGgg -5'
16002 5' -61.5 NC_004065.1 + 6944 0.67 0.722517
Target:  5'- gUCCGCCgucggaagCUGCgUCGACGgagUCCUCUCa -3'
miRNA:   3'- -AGGCGGa-------GACG-GGCUGUa--GGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 179009 0.67 0.713254
Target:  5'- aUCGaUCUC-GCCgCGGCGUCuCCUCCCa -3'
miRNA:   3'- aGGC-GGAGaCGG-GCUGUAG-GGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 95463 0.67 0.713254
Target:  5'- aUCCGUUUCaggaGCCCGuCcUCCCUCUUCc -3'
miRNA:   3'- -AGGCGGAGa---CGGGCuGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 111300 0.67 0.703932
Target:  5'- aCUGCgagacCUGCCgGACAcgacgcuccCCCUCCCCa -3'
miRNA:   3'- aGGCGga---GACGGgCUGUa--------GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 111382 0.67 0.702997
Target:  5'- cCCGCuCUCaccagccaggucaUGCgCGACcgggccggAUUCCUCCCCg -3'
miRNA:   3'- aGGCG-GAG-------------ACGgGCUG--------UAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 121049 0.68 0.694556
Target:  5'- cCCGCCcuucgUCggaGCCUGGCGUCgUgCCCCa -3'
miRNA:   3'- aGGCGG-----AGa--CGGGCUGUAGgGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 84306 0.68 0.694556
Target:  5'- cCCGCCUCcuccaCCGACcUCuCCUCCUa -3'
miRNA:   3'- aGGCGGAGacg--GGCUGuAG-GGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 109819 0.68 0.694556
Target:  5'- gUCCGCCcaagaagaUCggcagggcgaGCgCGGCGUCgCUCCCCu -3'
miRNA:   3'- -AGGCGG--------AGa---------CGgGCUGUAGgGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.