miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 109819 0.68 0.694556
Target:  5'- gUCCGCCcaagaagaUCggcagggcgaGCgCGGCGUCgCUCCCCu -3'
miRNA:   3'- -AGGCGG--------AGa---------CGgGCUGUAGgGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 67713 0.68 0.685136
Target:  5'- gCCGCCUCUGCCUcuGCuUCUguUUCUCCu -3'
miRNA:   3'- aGGCGGAGACGGGc-UGuAGG--GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 218213 0.68 0.675677
Target:  5'- aCCGaCUCcGUCCGGCAUCCaauaaaaaCCCCu -3'
miRNA:   3'- aGGCgGAGaCGGGCUGUAGGga------GGGG- -5'
16002 5' -61.5 NC_004065.1 + 168801 0.68 0.675677
Target:  5'- cUCCGcCCUCUGCUCcuucgccauCAUcCCCUCgCCg -3'
miRNA:   3'- -AGGC-GGAGACGGGcu-------GUA-GGGAGgGG- -5'
16002 5' -61.5 NC_004065.1 + 120892 0.68 0.675677
Target:  5'- aCCGCCgucaCCCGcCGUCCCcgccaccuccgUCCCCu -3'
miRNA:   3'- aGGCGGagacGGGCuGUAGGG-----------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 158056 0.68 0.675677
Target:  5'- gUCGCCUCcgggcUGCCCGGCuccaccggcggcGUCgCCUCCgaCCa -3'
miRNA:   3'- aGGCGGAG-----ACGGGCUG------------UAG-GGAGG--GG- -5'
16002 5' -61.5 NC_004065.1 + 165693 0.68 0.666187
Target:  5'- aUCCcaggGCCUCgugugaGCCCGGCuGUCCCUUgaCCa -3'
miRNA:   3'- -AGG----CGGAGa-----CGGGCUG-UAGGGAGg-GG- -5'
16002 5' -61.5 NC_004065.1 + 157780 0.68 0.666187
Target:  5'- aUCUGCUUCaccagGUCCGACAUCCacaUCUgCg -3'
miRNA:   3'- -AGGCGGAGa----CGGGCUGUAGGg--AGGgG- -5'
16002 5' -61.5 NC_004065.1 + 86480 0.68 0.656673
Target:  5'- cCCGuCUUCUuaCCGAUGUCCCccUCCCa -3'
miRNA:   3'- aGGC-GGAGAcgGGCUGUAGGG--AGGGg -5'
16002 5' -61.5 NC_004065.1 + 87559 0.68 0.656673
Target:  5'- gCCGCCUgUcCCCGcgaAUCCCUCUCg -3'
miRNA:   3'- aGGCGGAgAcGGGCug-UAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 99302 0.68 0.655721
Target:  5'- aCCGcCCUCUccuccucguaaucGCUCGACGcgccUCCUUCUCCu -3'
miRNA:   3'- aGGC-GGAGA-------------CGGGCUGU----AGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 75885 0.68 0.653815
Target:  5'- gCCGCCaCcGCCCGGggcgauCGUCCCauguggacacacgaUCCCCa -3'
miRNA:   3'- aGGCGGaGaCGGGCU------GUAGGG--------------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 99239 0.68 0.647143
Target:  5'- aUCCGCCUCgcgaacGCCugcagguucuCGACGUCgucgucguccuCCUCCUCg -3'
miRNA:   3'- -AGGCGGAGa-----CGG----------GCUGUAG-----------GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 45143 0.68 0.647142
Target:  5'- cCCGauCCUCUcucguuCCCGGCGUCCCgccgCCCg -3'
miRNA:   3'- aGGC--GGAGAc-----GGGCUGUAGGGa---GGGg -5'
16002 5' -61.5 NC_004065.1 + 101287 0.68 0.647142
Target:  5'- gCUGCCgacggCUGCCuCGGCGgccagccgCCuCUCCCUg -3'
miRNA:   3'- aGGCGGa----GACGG-GCUGUa-------GG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93785 0.69 0.637601
Target:  5'- cCCGCUcccgguucCUGUCCGGC--UCCUCCCCc -3'
miRNA:   3'- aGGCGGa-------GACGGGCUGuaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 110084 0.69 0.628056
Target:  5'- gCCGuCCUCUGCCUGcUGUUCCUCUg- -3'
miRNA:   3'- aGGC-GGAGACGGGCuGUAGGGAGGgg -5'
16002 5' -61.5 NC_004065.1 + 49680 0.69 0.628056
Target:  5'- gCCGCCggaGCa-GGCGUCCCUCCUg -3'
miRNA:   3'- aGGCGGagaCGggCUGUAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 165105 0.69 0.618514
Target:  5'- gUCGUCUCUGaggCGGCGUCCCgCCCg -3'
miRNA:   3'- aGGCGGAGACgg-GCUGUAGGGaGGGg -5'
16002 5' -61.5 NC_004065.1 + 79675 0.69 0.618514
Target:  5'- -gUGCCgaacgUGCCCGACAUCCgcaUCCaCCg -3'
miRNA:   3'- agGCGGag---ACGGGCUGUAGGg--AGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.