miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 2154 0.72 0.428134
Target:  5'- gUCCGCCgUCUccccccGUCCGugAUCUC-CCCCa -3'
miRNA:   3'- -AGGCGG-AGA------CGGGCugUAGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 6944 0.67 0.722517
Target:  5'- gUCCGCCgucggaagCUGCgUCGACGgagUCCUCUCa -3'
miRNA:   3'- -AGGCGGa-------GACG-GGCUGUa--GGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 8042 0.66 0.776412
Target:  5'- aUCGUCUUcggGuCCCGACGUCgCCUaCCUCa -3'
miRNA:   3'- aGGCGGAGa--C-GGGCUGUAG-GGA-GGGG- -5'
16002 5' -61.5 NC_004065.1 + 9559 0.66 0.785045
Target:  5'- gCCGUCUCU-CCCGAgAUCCgUuucgacgaUCCCg -3'
miRNA:   3'- aGGCGGAGAcGGGCUgUAGGgA--------GGGG- -5'
16002 5' -61.5 NC_004065.1 + 18616 0.66 0.793558
Target:  5'- aCCGCCcagGCCC-ACGUUUC-CCCCg -3'
miRNA:   3'- aGGCGGagaCGGGcUGUAGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 27058 0.7 0.58428
Target:  5'- cCCaCCUCcGCCCGuACAggcgacugugucgcgUCCuCUCCCCa -3'
miRNA:   3'- aGGcGGAGaCGGGC-UGU---------------AGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 27432 0.71 0.488371
Target:  5'- cCCaGCCUCUGCCCGucccACcgUCgUCUCCg -3'
miRNA:   3'- aGG-CGGAGACGGGC----UGuaGGgAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 28516 0.69 0.599463
Target:  5'- uUCCGCCcgCUGCCUGACGagaguagcgCCCgCCgCa -3'
miRNA:   3'- -AGGCGGa-GACGGGCUGUa--------GGGaGGgG- -5'
16002 5' -61.5 NC_004065.1 + 29477 0.67 0.731712
Target:  5'- cCCGCUgCcGCCCGuCG-CCCUCgCCa -3'
miRNA:   3'- aGGCGGaGaCGGGCuGUaGGGAGgGG- -5'
16002 5' -61.5 NC_004065.1 + 30823 0.71 0.515386
Target:  5'- aUCGCCUC-GCCaucACAUaaacCCCUCCCCu -3'
miRNA:   3'- aGGCGGAGaCGGgc-UGUA----GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 35617 0.66 0.793558
Target:  5'- cUCCGUCUggaacGCCCGcCGcUCUgUCCCCa -3'
miRNA:   3'- -AGGCGGAga---CGGGCuGU-AGGgAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 38815 0.7 0.561656
Target:  5'- aUCCGCCUCU-CgCUGAUcUCCCcgacCCCCa -3'
miRNA:   3'- -AGGCGGAGAcG-GGCUGuAGGGa---GGGG- -5'
16002 5' -61.5 NC_004065.1 + 43321 0.66 0.758817
Target:  5'- gUCGUCaUCUgGCCCGGCGgggacgCCCcacgcgccgcgUCCCCg -3'
miRNA:   3'- aGGCGG-AGA-CGGGCUGUa-----GGG-----------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 45143 0.68 0.647142
Target:  5'- cCCGauCCUCUcucguuCCCGGCGUCCCgccgCCCg -3'
miRNA:   3'- aGGC--GGAGAc-----GGGCUGUAGGGa---GGGg -5'
16002 5' -61.5 NC_004065.1 + 45241 0.67 0.739924
Target:  5'- gUCCuCCUCcGCCCGuCGcgucgucUCCUUCUCCu -3'
miRNA:   3'- -AGGcGGAGaCGGGCuGU-------AGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 49680 0.69 0.628056
Target:  5'- gCCGCCggaGCa-GGCGUCCCUCCUg -3'
miRNA:   3'- aGGCGGagaCGggCUGUAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 53559 1.12 0.001075
Target:  5'- cUCCGCCUCUGCCCGACAUCCCUCCCCg -3'
miRNA:   3'- -AGGCGGAGACGGGCUGUAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 53661 0.67 0.722517
Target:  5'- -gCGCCUC-GUCCGcaaggacacCAUCUCUCCCUg -3'
miRNA:   3'- agGCGGAGaCGGGCu--------GUAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 53695 0.75 0.30856
Target:  5'- aUCGUgUCgccGCCCGACcgCCCUCCUCc -3'
miRNA:   3'- aGGCGgAGa--CGGGCUGuaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 55153 0.66 0.785045
Target:  5'- aCCGCCguu-CCCGGCccUCuUCUCCCCg -3'
miRNA:   3'- aGGCGGagacGGGCUGu-AG-GGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.