miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 57935 0.71 0.479513
Target:  5'- gCCGCCUCc-CCCGGC--CCCUCCaCCc -3'
miRNA:   3'- aGGCGGAGacGGGCUGuaGGGAGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 59653 0.69 0.612792
Target:  5'- cUCCGCuacCUCUGCCuuucaugcccacgguCGACAUCCCga-CCa -3'
miRNA:   3'- -AGGCG---GAGACGG---------------GCUGUAGGGaggGG- -5'
16002 5' -61.5 NC_004065.1 + 63888 0.71 0.524527
Target:  5'- gCCGCCg--GCgCCGACGUCUCUgCCg -3'
miRNA:   3'- aGGCGGagaCG-GGCUGUAGGGAgGGg -5'
16002 5' -61.5 NC_004065.1 + 64656 0.66 0.809378
Target:  5'- gUCCGCCgugcuggccgagaUCUGCaccaCCGACAUCCaccagaUCCa- -3'
miRNA:   3'- -AGGCGG-------------AGACG----GGCUGUAGGg-----AGGgg -5'
16002 5' -61.5 NC_004065.1 + 66403 0.7 0.557907
Target:  5'- gCCGCCgcucgauccggagCUaCCCGAgGUCCgCUCCCUa -3'
miRNA:   3'- aGGCGGa------------GAcGGGCUgUAGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 67713 0.68 0.685136
Target:  5'- gCCGCCUCUGCCUcuGCuUCUguUUCUCCu -3'
miRNA:   3'- aGGCGGAGACGGGc-UGuAGG--GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 68203 0.66 0.758817
Target:  5'- gUCCGCC-C-GCCCGucCGUCCgUCCa- -3'
miRNA:   3'- -AGGCGGaGaCGGGCu-GUAGGgAGGgg -5'
16002 5' -61.5 NC_004065.1 + 75885 0.68 0.653815
Target:  5'- gCCGCCaCcGCCCGGggcgauCGUCCCauguggacacacgaUCCCCa -3'
miRNA:   3'- aGGCGGaGaCGGGCU------GUAGGG--------------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 79675 0.69 0.618514
Target:  5'- -gUGCCgaacgUGCCCGACAUCCgcaUCCaCCg -3'
miRNA:   3'- agGCGGag---ACGGGCUGUAGGg--AGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 80101 0.66 0.810197
Target:  5'- cCCGCCUcCUGCcgagCCGcGCGcCCCUCaUCCa -3'
miRNA:   3'- aGGCGGA-GACG----GGC-UGUaGGGAG-GGG- -5'
16002 5' -61.5 NC_004065.1 + 84306 0.68 0.694556
Target:  5'- cCCGCCUCcuccaCCGACcUCuCCUCCUa -3'
miRNA:   3'- aGGCGGAGacg--GGCUGuAG-GGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 86480 0.68 0.656673
Target:  5'- cCCGuCUUCUuaCCGAUGUCCCccUCCCa -3'
miRNA:   3'- aGGC-GGAGAcgGGCUGUAGGG--AGGGg -5'
16002 5' -61.5 NC_004065.1 + 86747 0.66 0.776412
Target:  5'- gCCGCCUCgGCCCuugaagcuGCcgCCC-CCgCCg -3'
miRNA:   3'- aGGCGGAGaCGGGc-------UGuaGGGaGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 87329 0.66 0.793558
Target:  5'- -aCGCCggguccaggagCaGCCCGAUAUCgcucaCUCCCCc -3'
miRNA:   3'- agGCGGa----------GaCGGGCUGUAGg----GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 87559 0.68 0.656673
Target:  5'- gCCGCCUgUcCCCGcgaAUCCCUCUCg -3'
miRNA:   3'- aGGCGGAgAcGGGCug-UAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 90181 0.66 0.767667
Target:  5'- cUCCGCCgUC-GCCCG-CcUCCCgggaCUCCa -3'
miRNA:   3'- -AGGCGG-AGaCGGGCuGuAGGGa---GGGG- -5'
16002 5' -61.5 NC_004065.1 + 90492 0.74 0.35755
Target:  5'- cUCGCgUCUuggcGUCCGACGUCCUgaUCCCCu -3'
miRNA:   3'- aGGCGgAGA----CGGGCUGUAGGG--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 91766 0.73 0.380153
Target:  5'- gUCCGCCUCggacaCCCGA---CCCUCCUCg -3'
miRNA:   3'- -AGGCGGAGac---GGGCUguaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93154 0.67 0.739924
Target:  5'- aCCaGCUUCUGacgcugaCCgCGGCAUCCgUCCCg -3'
miRNA:   3'- aGG-CGGAGAC-------GG-GCUGUAGGgAGGGg -5'
16002 5' -61.5 NC_004065.1 + 93412 0.7 0.570115
Target:  5'- gCCGCCUCggaccagcGCCCcGCAcCCCacccggaUCCCCg -3'
miRNA:   3'- aGGCGGAGa-------CGGGcUGUaGGG-------AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.