miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 112824 0.7 0.542987
Target:  5'- cCCGCCaucacCUGCCUGGCGcaacgCCUgCCCCa -3'
miRNA:   3'- aGGCGGa----GACGGGCUGUa----GGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 116126 0.77 0.235749
Target:  5'- cUCCGcCCUCUcGUCCGGCGUaagagccgcgaaCCUCCCCa -3'
miRNA:   3'- -AGGC-GGAGA-CGGGCUGUAg-----------GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 120349 0.67 0.737194
Target:  5'- cUCCaCCUCgggguacgucggcGCCUGACGUUCgCUCUCCg -3'
miRNA:   3'- -AGGcGGAGa------------CGGGCUGUAGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 120892 0.68 0.675677
Target:  5'- aCCGCCgucaCCCGcCGUCCCcgccaccuccgUCCCCu -3'
miRNA:   3'- aGGCGGagacGGGCuGUAGGG-----------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 121049 0.68 0.694556
Target:  5'- cCCGCCcuucgUCggaGCCUGGCGUCgUgCCCCa -3'
miRNA:   3'- aGGCGG-----AGa--CGGGCUGUAGgGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 122919 0.67 0.740832
Target:  5'- aCCGCgccgaUCaGCCgCGACAgcuUCCCcacgUCCCCg -3'
miRNA:   3'- aGGCGg----AGaCGG-GCUGU---AGGG----AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 125698 0.68 0.694556
Target:  5'- -gCGCC-CUGaCCCGAuCAUCCC-CCUg -3'
miRNA:   3'- agGCGGaGAC-GGGCU-GUAGGGaGGGg -5'
16002 5' -61.5 NC_004065.1 + 126790 0.66 0.801945
Target:  5'- aCCGUCgUCUGUCgCGAgGuggggaUCCCggCCCCg -3'
miRNA:   3'- aGGCGG-AGACGG-GCUgU------AGGGa-GGGG- -5'
16002 5' -61.5 NC_004065.1 + 133274 0.71 0.479513
Target:  5'- cUCCGCCgUC-GCCCuGCucgCCCUCgCCCg -3'
miRNA:   3'- -AGGCGG-AGaCGGGcUGua-GGGAG-GGG- -5'
16002 5' -61.5 NC_004065.1 + 135302 0.67 0.74897
Target:  5'- cUCCGCCgccgacuUCgGCCCGcucgaGCcgCCCUCCa- -3'
miRNA:   3'- -AGGCGG-------AGaCGGGC-----UGuaGGGAGGgg -5'
16002 5' -61.5 NC_004065.1 + 136683 0.71 0.488371
Target:  5'- aCCGCCUgCUGCgaUCGGC-UCgCCUUCCCg -3'
miRNA:   3'- aGGCGGA-GACG--GGCUGuAG-GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 138264 0.67 0.740832
Target:  5'- cUCCaGCCUC-GCCCc-CGUCgCUCCCg -3'
miRNA:   3'- -AGG-CGGAGaCGGGcuGUAGgGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 139236 0.66 0.810198
Target:  5'- gUCaCGUC-CUGCCgGgacagcGCGUCgCCUCCCUg -3'
miRNA:   3'- -AG-GCGGaGACGGgC------UGUAG-GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 142733 0.69 0.589966
Target:  5'- -gCGCCUC-GCUCGACuucuguagcgGUCUCUCCCg -3'
miRNA:   3'- agGCGGAGaCGGGCUG----------UAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 143467 0.66 0.801945
Target:  5'- cUCUGCgUCgucgugacGCCCGuGCGUCUggaUCCCCa -3'
miRNA:   3'- -AGGCGgAGa-------CGGGC-UGUAGGg--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 146903 0.66 0.793558
Target:  5'- -aCGCCUC-GCCC-ACAg--CUCCCCg -3'
miRNA:   3'- agGCGGAGaCGGGcUGUaggGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 148151 0.71 0.48837
Target:  5'- cCCGCCg-UGCCCGAgaacCAUCUCUUCaCCa -3'
miRNA:   3'- aGGCGGagACGGGCU----GUAGGGAGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 149247 0.66 0.776412
Target:  5'- gCCGCCgUC-GCCUG-C-UCCCUCUCUa -3'
miRNA:   3'- aGGCGG-AGaCGGGCuGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 149887 0.66 0.767667
Target:  5'- gCCGCCUCUGCCgCGcCAgggacgaCCUgCaCCu -3'
miRNA:   3'- aGGCGGAGACGG-GCuGUag-----GGAgG-GG- -5'
16002 5' -61.5 NC_004065.1 + 149928 0.66 0.801944
Target:  5'- -gUGCCcgUGCCCGAacucaCCCUCUCCu -3'
miRNA:   3'- agGCGGagACGGGCUgua--GGGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.