miRNA display CGI


Results 81 - 100 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 150799 0.67 0.731712
Target:  5'- aUCCGCUggUGCgCGAUGUCCaggcucaCCCCg -3'
miRNA:   3'- -AGGCGGagACGgGCUGUAGGga-----GGGG- -5'
16002 5' -61.5 NC_004065.1 + 152631 0.71 0.488371
Target:  5'- aUCC-CCU-UGCCCGACAUCCCgacgCUCg -3'
miRNA:   3'- -AGGcGGAgACGGGCUGUAGGGa---GGGg -5'
16002 5' -61.5 NC_004065.1 + 153285 0.66 0.793558
Target:  5'- gCCGCCg--GCgCCG-CG-CCCgUCCCCg -3'
miRNA:   3'- aGGCGGagaCG-GGCuGUaGGG-AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 154370 0.69 0.589965
Target:  5'- gCCGCCUCg--CCGACcUCcacuuccaccuCCUCCCCg -3'
miRNA:   3'- aGGCGGAGacgGGCUGuAG-----------GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 155196 0.66 0.810197
Target:  5'- gCCGCCUCgGuCCCGACccgggCgUCUCCa -3'
miRNA:   3'- aGGCGGAGaC-GGGCUGuag--GgAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 157780 0.68 0.666187
Target:  5'- aUCUGCUUCaccagGUCCGACAUCCacaUCUgCg -3'
miRNA:   3'- -AGGCGGAGa----CGGGCUGUAGGg--AGGgG- -5'
16002 5' -61.5 NC_004065.1 + 158056 0.68 0.675677
Target:  5'- gUCGCCUCcgggcUGCCCGGCuccaccggcggcGUCgCCUCCgaCCa -3'
miRNA:   3'- aGGCGGAG-----ACGGGCUG------------UAG-GGAGG--GG- -5'
16002 5' -61.5 NC_004065.1 + 158475 0.72 0.453428
Target:  5'- -gCGCCUCUcCCCGAacaCGUCCgUCCCg -3'
miRNA:   3'- agGCGGAGAcGGGCU---GUAGGgAGGGg -5'
16002 5' -61.5 NC_004065.1 + 160237 0.69 0.608981
Target:  5'- cUCCGCCUC-GCUCuGCAUCCUcuUCUUCa -3'
miRNA:   3'- -AGGCGGAGaCGGGcUGUAGGG--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 160869 0.72 0.436473
Target:  5'- cUCCGCCUCguccaGCgUCGACAg-CUUCCCCa -3'
miRNA:   3'- -AGGCGGAGa----CG-GGCUGUagGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 161724 0.69 0.599463
Target:  5'- aCCGUCUCgaaGUCCGuCGccgagCCCUCCUCg -3'
miRNA:   3'- aGGCGGAGa--CGGGCuGUa----GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 163197 0.67 0.739924
Target:  5'- cUCCGCCUCguaCCGgaaaucaacggacGCGUCCCUCggacgUCCg -3'
miRNA:   3'- -AGGCGGAGacgGGC-------------UGUAGGGAG-----GGG- -5'
16002 5' -61.5 NC_004065.1 + 165105 0.69 0.618514
Target:  5'- gUCGUCUCUGaggCGGCGUCCCgCCCg -3'
miRNA:   3'- aGGCGGAGACgg-GCUGUAGGGaGGGg -5'
16002 5' -61.5 NC_004065.1 + 165693 0.68 0.666187
Target:  5'- aUCCcaggGCCUCgugugaGCCCGGCuGUCCCUUgaCCa -3'
miRNA:   3'- -AGG----CGGAGa-----CGGGCUG-UAGGGAGg-GG- -5'
16002 5' -61.5 NC_004065.1 + 166989 0.67 0.722517
Target:  5'- gUCGCCUCgcgcGCCgGACAgCUCUCCg- -3'
miRNA:   3'- aGGCGGAGa---CGGgCUGUaGGGAGGgg -5'
16002 5' -61.5 NC_004065.1 + 167284 0.71 0.524527
Target:  5'- aUCGCCUCuUGCUgGA-GUCCCUCCUa -3'
miRNA:   3'- aGGCGGAG-ACGGgCUgUAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 168801 0.68 0.675677
Target:  5'- cUCCGcCCUCUGCUCcuucgccauCAUcCCCUCgCCg -3'
miRNA:   3'- -AGGC-GGAGACGGGcu-------GUA-GGGAGgGG- -5'
16002 5' -61.5 NC_004065.1 + 169459 0.67 0.749869
Target:  5'- cCCGCCgugugCgGaCCCGGCGUCUCcgucgUCUCCg -3'
miRNA:   3'- aGGCGGa----GaC-GGGCUGUAGGG-----AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 171266 0.67 0.740832
Target:  5'- gUCGCCUCUuuccaaucggGCCCGcCGUCUCUagUCCUg -3'
miRNA:   3'- aGGCGGAGA----------CGGGCuGUAGGGA--GGGG- -5'
16002 5' -61.5 NC_004065.1 + 171462 0.66 0.793558
Target:  5'- aUCCGCUggaUC-GCgCCGaACAUCCg-CCCCa -3'
miRNA:   3'- -AGGCGG---AGaCG-GGC-UGUAGGgaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.