miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 229298 0.66 0.810197
Target:  5'- aCCGCUgagagacGCUCGACAUUCUUuacCCCCg -3'
miRNA:   3'- aGGCGGaga----CGGGCUGUAGGGA---GGGG- -5'
16002 5' -61.5 NC_004065.1 + 224819 0.7 0.552298
Target:  5'- aCCGCCgUCUGUCCGuag-CCCuugaucacgauuUCCCCg -3'
miRNA:   3'- aGGCGG-AGACGGGCuguaGGG------------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 218213 0.68 0.675677
Target:  5'- aCCGaCUCcGUCCGGCAUCCaauaaaaaCCCCu -3'
miRNA:   3'- aGGCgGAGaCGGGCUGUAGGga------GGGG- -5'
16002 5' -61.5 NC_004065.1 + 210334 0.69 0.595661
Target:  5'- cUCCGCgUUUcagccguuacccgGCCCGGCAUacgccaccuuccaaCCCUUCCCu -3'
miRNA:   3'- -AGGCGgAGA-------------CGGGCUGUA--------------GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 206461 0.72 0.452572
Target:  5'- cCCGCCUgcCUGCCCGcccgcccGCAUCUucuuCUCCCg -3'
miRNA:   3'- aGGCGGA--GACGGGC-------UGUAGG----GAGGGg -5'
16002 5' -61.5 NC_004065.1 + 202641 0.69 0.599463
Target:  5'- gCCGCCgcugCUGCugcugcugcugCCGGCucUUCUUCCCCg -3'
miRNA:   3'- aGGCGGa---GACG-----------GGCUGu-AGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 200898 0.66 0.801944
Target:  5'- cCCGUCgcgCUGggcgaCCGGCcUCCCaagugUCCCCa -3'
miRNA:   3'- aGGCGGa--GACg----GGCUGuAGGG-----AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 200586 0.71 0.48837
Target:  5'- cUCCGCCacCUaCCCGGCAccgucuucUCCCUgCCCu -3'
miRNA:   3'- -AGGCGGa-GAcGGGCUGU--------AGGGAgGGG- -5'
16002 5' -61.5 NC_004065.1 + 198368 0.66 0.758817
Target:  5'- cUUCGCCaggaaCaGCgCCGACGUCCCguagCCCg -3'
miRNA:   3'- -AGGCGGa----GaCG-GGCUGUAGGGa---GGGg -5'
16002 5' -61.5 NC_004065.1 + 191612 0.66 0.776412
Target:  5'- -aCGCCUCU-CCCGcgaaGUCCgugUCCCCg -3'
miRNA:   3'- agGCGGAGAcGGGCug--UAGGg--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 190593 0.66 0.801945
Target:  5'- aUCUGaguaUCUGUaucaUGGCGUCCCggCCCCg -3'
miRNA:   3'- -AGGCgg--AGACGg---GCUGUAGGGa-GGGG- -5'
16002 5' -61.5 NC_004065.1 + 190406 0.66 0.758817
Target:  5'- cUCC-CCUCggaggGCCCGguaGCAcuuugacucUCCC-CCCCg -3'
miRNA:   3'- -AGGcGGAGa----CGGGC---UGU---------AGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 186750 0.73 0.387898
Target:  5'- gUCGCCac-GCCgGACAUCCC-CCCCu -3'
miRNA:   3'- aGGCGGagaCGGgCUGUAGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 185093 0.66 0.785045
Target:  5'- gCCGUCUCUucCCCGuC-UUCCUCCUCu -3'
miRNA:   3'- aGGCGGAGAc-GGGCuGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 182274 0.66 0.801944
Target:  5'- aCC-CCUcCUGCCCGGCcauggCCuCUgaCCCCg -3'
miRNA:   3'- aGGcGGA-GACGGGCUGua---GG-GA--GGGG- -5'
16002 5' -61.5 NC_004065.1 + 179146 0.66 0.801944
Target:  5'- aCCGuCCUC-GCCCGugccCGUCgaUCUCUCCg -3'
miRNA:   3'- aGGC-GGAGaCGGGCu---GUAG--GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 179009 0.67 0.713254
Target:  5'- aUCGaUCUC-GCCgCGGCGUCuCCUCCCa -3'
miRNA:   3'- aGGC-GGAGaCGG-GCUGUAG-GGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 177234 0.66 0.793558
Target:  5'- -gCGCgCUCUGCUCGcCucugCUUUCCCCu -3'
miRNA:   3'- agGCG-GAGACGGGCuGua--GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 171462 0.66 0.793558
Target:  5'- aUCCGCUggaUC-GCgCCGaACAUCCg-CCCCa -3'
miRNA:   3'- -AGGCGG---AGaCG-GGC-UGUAGGgaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 171266 0.67 0.740832
Target:  5'- gUCGCCUCUuuccaaucggGCCCGcCGUCUCUagUCCUg -3'
miRNA:   3'- aGGCGGAGA----------CGGGCuGUAGGGA--GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.