miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 110403 0.66 0.810198
Target:  5'- -aCGCCacgGCCgaCGGCGUCuCCUCCgCCg -3'
miRNA:   3'- agGCGGagaCGG--GCUGUAG-GGAGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 110084 0.69 0.628056
Target:  5'- gCCGuCCUCUGCCUGcUGUUCCUCUg- -3'
miRNA:   3'- aGGC-GGAGACGGGCuGUAGGGAGGgg -5'
16002 5' -61.5 NC_004065.1 + 109819 0.68 0.694556
Target:  5'- gUCCGCCcaagaagaUCggcagggcgaGCgCGGCGUCgCUCCCCu -3'
miRNA:   3'- -AGGCGG--------AGa---------CGgGCUGUAGgGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 105043 0.66 0.810198
Target:  5'- -aCGCgUCUGUCCGGgGUCCUcagUUCCa -3'
miRNA:   3'- agGCGgAGACGGGCUgUAGGG---AGGGg -5'
16002 5' -61.5 NC_004065.1 + 102551 0.78 0.206496
Target:  5'- cCCGCCgc-GCCCGACca-CCUCCCCg -3'
miRNA:   3'- aGGCGGagaCGGGCUGuagGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 101287 0.68 0.647142
Target:  5'- gCUGCCgacggCUGCCuCGGCGgccagccgCCuCUCCCUg -3'
miRNA:   3'- aGGCGGa----GACGG-GCUGUa-------GG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 100445 0.66 0.776412
Target:  5'- gCCGCUUCU--CCGGCAUCUC-CaCCCg -3'
miRNA:   3'- aGGCGGAGAcgGGCUGUAGGGaG-GGG- -5'
16002 5' -61.5 NC_004065.1 + 99302 0.68 0.655721
Target:  5'- aCCGcCCUCUccuccucguaaucGCUCGACGcgccUCCUUCUCCu -3'
miRNA:   3'- aGGC-GGAGA-------------CGGGCUGU----AGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 99239 0.68 0.647143
Target:  5'- aUCCGCCUCgcgaacGCCugcagguucuCGACGUCgucgucguccuCCUCCUCg -3'
miRNA:   3'- -AGGCGGAGa-----CGG----------GCUGUAG-----------GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 96418 0.66 0.810198
Target:  5'- gUCCGCCUCgaaaucgcGCUCG-CAaCgCUCCUCg -3'
miRNA:   3'- -AGGCGGAGa-------CGGGCuGUaGgGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 95463 0.67 0.713254
Target:  5'- aUCCGUUUCaggaGCCCGuCcUCCCUCUUCc -3'
miRNA:   3'- -AGGCGGAGa---CGGGCuGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 94470 0.66 0.801944
Target:  5'- gCCGCCUC--CCCGuCGUCCg-CCCg -3'
miRNA:   3'- aGGCGGAGacGGGCuGUAGGgaGGGg -5'
16002 5' -61.5 NC_004065.1 + 93886 0.79 0.171336
Target:  5'- cCCGguCC-CUGUCCGGCuUCCCUCCCCg -3'
miRNA:   3'- aGGC--GGaGACGGGCUGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93854 0.79 0.171336
Target:  5'- cCCGguCC-CUGUCCGGCuUCCCUCCCCg -3'
miRNA:   3'- aGGC--GGaGACGGGCUGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93822 0.79 0.171336
Target:  5'- cCCGguCC-CUGUCCGGCuUCCCUCCCCg -3'
miRNA:   3'- aGGC--GGaGACGGGCUGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93785 0.69 0.637601
Target:  5'- cCCGCUcccgguucCUGUCCGGC--UCCUCCCCc -3'
miRNA:   3'- aGGCGGa-------GACGGGCUGuaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93643 0.67 0.722517
Target:  5'- aCCGaCCUCggaucCCCG-CA-CCCUUCCCg -3'
miRNA:   3'- aGGC-GGAGac---GGGCuGUaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93550 0.66 0.784187
Target:  5'- aCCgGCCUCggcucCCCGGCuuUCCggcucggCUCCCCa -3'
miRNA:   3'- aGG-CGGAGac---GGGCUGu-AGG-------GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93412 0.7 0.570115
Target:  5'- gCCGCCUCggaccagcGCCCcGCAcCCCacccggaUCCCCg -3'
miRNA:   3'- aGGCGGAGa-------CGGGcUGUaGGG-------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93154 0.67 0.739924
Target:  5'- aCCaGCUUCUGacgcugaCCgCGGCAUCCgUCCCg -3'
miRNA:   3'- aGG-CGGAGAC-------GG-GCUGUAGGgAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.