miRNA display CGI


Results 1 - 20 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 99239 0.68 0.647143
Target:  5'- aUCCGCCUCgcgaacGCCugcagguucuCGACGUCgucgucguccuCCUCCUCg -3'
miRNA:   3'- -AGGCGGAGa-----CGG----------GCUGUAG-----------GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 38815 0.7 0.561656
Target:  5'- aUCCGCCUCU-CgCUGAUcUCCCcgacCCCCa -3'
miRNA:   3'- -AGGCGGAGAcG-GGCUGuAGGGa---GGGG- -5'
16002 5' -61.5 NC_004065.1 + 93412 0.7 0.570115
Target:  5'- gCCGCCUCggaccagcGCCCcGCAcCCCacccggaUCCCCg -3'
miRNA:   3'- aGGCGGAGa-------CGGGcUGUaGGG-------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 27058 0.7 0.58428
Target:  5'- cCCaCCUCcGCCCGuACAggcgacugugucgcgUCCuCUCCCCa -3'
miRNA:   3'- aGGcGGAGaCGGGC-UGU---------------AGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 142733 0.69 0.589966
Target:  5'- -gCGCCUC-GCUCGACuucuguagcgGUCUCUCCCg -3'
miRNA:   3'- agGCGGAGaCGGGCUG----------UAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 28516 0.69 0.599463
Target:  5'- uUCCGCCcgCUGCCUGACGagaguagcgCCCgCCgCa -3'
miRNA:   3'- -AGGCGGa-GACGGGCUGUa--------GGGaGGgG- -5'
16002 5' -61.5 NC_004065.1 + 110084 0.69 0.628056
Target:  5'- gCCGuCCUCUGCCUGcUGUUCCUCUg- -3'
miRNA:   3'- aGGC-GGAGACGGGCuGUAGGGAGGgg -5'
16002 5' -61.5 NC_004065.1 + 49680 0.69 0.628056
Target:  5'- gCCGCCggaGCa-GGCGUCCCUCCUg -3'
miRNA:   3'- aGGCGGagaCGggCUGUAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 93785 0.69 0.637601
Target:  5'- cCCGCUcccgguucCUGUCCGGC--UCCUCCCCc -3'
miRNA:   3'- aGGCGGa-------GACGGGCUGuaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 224819 0.7 0.552298
Target:  5'- aCCGCCgUCUGUCCGuag-CCCuugaucacgauuUCCCCg -3'
miRNA:   3'- aGGCGG-AGACGGGCuguaGGG------------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 152631 0.71 0.488371
Target:  5'- aUCC-CCU-UGCCCGACAUCCCgacgCUCg -3'
miRNA:   3'- -AGGcGGAgACGGGCUGUAGGGa---GGGg -5'
16002 5' -61.5 NC_004065.1 + 136683 0.71 0.488371
Target:  5'- aCCGCCUgCUGCgaUCGGC-UCgCCUUCCCg -3'
miRNA:   3'- aGGCGGA-GACG--GGCUGuAG-GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93822 0.79 0.171336
Target:  5'- cCCGguCC-CUGUCCGGCuUCCCUCCCCg -3'
miRNA:   3'- aGGC--GGaGACGGGCUGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93854 0.79 0.171336
Target:  5'- cCCGguCC-CUGUCCGGCuUCCCUCCCCg -3'
miRNA:   3'- aGGC--GGaGACGGGCUGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93886 0.79 0.171336
Target:  5'- cCCGguCC-CUGUCCGGCuUCCCUCCCCg -3'
miRNA:   3'- aGGC--GGaGACGGGCUGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 102551 0.78 0.206496
Target:  5'- cCCGCCgc-GCCCGACca-CCUCCCCg -3'
miRNA:   3'- aGGCGGagaCGGGCUGuagGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 53695 0.75 0.30856
Target:  5'- aUCGUgUCgccGCCCGACcgCCCUCCUCc -3'
miRNA:   3'- aGGCGgAGa--CGGGCUGuaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 186750 0.73 0.387898
Target:  5'- gUCGCCac-GCCgGACAUCCC-CCCCu -3'
miRNA:   3'- aGGCGGagaCGGgCUGUAGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 57935 0.71 0.479513
Target:  5'- gCCGCCUCc-CCCGGC--CCCUCCaCCc -3'
miRNA:   3'- aGGCGGAGacGGGCUGuaGGGAGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 27432 0.71 0.488371
Target:  5'- cCCaGCCUCUGCCCGucccACcgUCgUCUCCg -3'
miRNA:   3'- aGG-CGGAGACGGGC----UGuaGGgAGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.