Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16002 | 5' | -61.5 | NC_004065.1 | + | 99239 | 0.68 | 0.647143 |
Target: 5'- aUCCGCCUCgcgaacGCCugcagguucuCGACGUCgucgucguccuCCUCCUCg -3' miRNA: 3'- -AGGCGGAGa-----CGG----------GCUGUAG-----------GGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 93785 | 0.69 | 0.637601 |
Target: 5'- cCCGCUcccgguucCUGUCCGGC--UCCUCCCCc -3' miRNA: 3'- aGGCGGa-------GACGGGCUGuaGGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 27432 | 0.71 | 0.488371 |
Target: 5'- cCCaGCCUCUGCCCGucccACcgUCgUCUCCg -3' miRNA: 3'- aGG-CGGAGACGGGC----UGuaGGgAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 57935 | 0.71 | 0.479513 |
Target: 5'- gCCGCCUCc-CCCGGC--CCCUCCaCCc -3' miRNA: 3'- aGGCGGAGacGGGCUGuaGGGAGG-GG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 186750 | 0.73 | 0.387898 |
Target: 5'- gUCGCCac-GCCgGACAUCCC-CCCCu -3' miRNA: 3'- aGGCGGagaCGGgCUGUAGGGaGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 53695 | 0.75 | 0.30856 |
Target: 5'- aUCGUgUCgccGCCCGACcgCCCUCCUCc -3' miRNA: 3'- aGGCGgAGa--CGGGCUGuaGGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 102551 | 0.78 | 0.206496 |
Target: 5'- cCCGCCgc-GCCCGACca-CCUCCCCg -3' miRNA: 3'- aGGCGGagaCGGGCUGuagGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 93886 | 0.79 | 0.171336 |
Target: 5'- cCCGguCC-CUGUCCGGCuUCCCUCCCCg -3' miRNA: 3'- aGGC--GGaGACGGGCUGuAGGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 93854 | 0.79 | 0.171336 |
Target: 5'- cCCGguCC-CUGUCCGGCuUCCCUCCCCg -3' miRNA: 3'- aGGC--GGaGACGGGCUGuAGGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 93822 | 0.79 | 0.171336 |
Target: 5'- cCCGguCC-CUGUCCGGCuUCCCUCCCCg -3' miRNA: 3'- aGGC--GGaGACGGGCUGuAGGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 136683 | 0.71 | 0.488371 |
Target: 5'- aCCGCCUgCUGCgaUCGGC-UCgCCUUCCCg -3' miRNA: 3'- aGGCGGA-GACG--GGCUGuAG-GGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 152631 | 0.71 | 0.488371 |
Target: 5'- aUCC-CCU-UGCCCGACAUCCCgacgCUCg -3' miRNA: 3'- -AGGcGGAgACGGGCUGUAGGGa---GGGg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 49680 | 0.69 | 0.628056 |
Target: 5'- gCCGCCggaGCa-GGCGUCCCUCCUg -3' miRNA: 3'- aGGCGGagaCGggCUGUAGGGAGGGg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 110084 | 0.69 | 0.628056 |
Target: 5'- gCCGuCCUCUGCCUGcUGUUCCUCUg- -3' miRNA: 3'- aGGC-GGAGACGGGCuGUAGGGAGGgg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 28516 | 0.69 | 0.599463 |
Target: 5'- uUCCGCCcgCUGCCUGACGagaguagcgCCCgCCgCa -3' miRNA: 3'- -AGGCGGa-GACGGGCUGUa--------GGGaGGgG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 142733 | 0.69 | 0.589966 |
Target: 5'- -gCGCCUC-GCUCGACuucuguagcgGUCUCUCCCg -3' miRNA: 3'- agGCGGAGaCGGGCUG----------UAGGGAGGGg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 27058 | 0.7 | 0.58428 |
Target: 5'- cCCaCCUCcGCCCGuACAggcgacugugucgcgUCCuCUCCCCa -3' miRNA: 3'- aGGcGGAGaCGGGC-UGU---------------AGG-GAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 93412 | 0.7 | 0.570115 |
Target: 5'- gCCGCCUCggaccagcGCCCcGCAcCCCacccggaUCCCCg -3' miRNA: 3'- aGGCGGAGa-------CGGGcUGUaGGG-------AGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 38815 | 0.7 | 0.561656 |
Target: 5'- aUCCGCCUCU-CgCUGAUcUCCCcgacCCCCa -3' miRNA: 3'- -AGGCGGAGAcG-GGCUGuAGGGa---GGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 224819 | 0.7 | 0.552298 |
Target: 5'- aCCGCCgUCUGUCCGuag-CCCuugaucacgauuUCCCCg -3' miRNA: 3'- aGGCGG-AGACGGGCuguaGGG------------AGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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