miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 93412 0.7 0.570115
Target:  5'- gCCGCCUCggaccagcGCCCcGCAcCCCacccggaUCCCCg -3'
miRNA:   3'- aGGCGGAGa-------CGGGcUGUaGGG-------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 67713 0.68 0.685136
Target:  5'- gCCGCCUCUGCCUcuGCuUCUguUUCUCCu -3'
miRNA:   3'- aGGCGGAGACGGGc-UGuAGG--GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 218213 0.68 0.675677
Target:  5'- aCCGaCUCcGUCCGGCAUCCaauaaaaaCCCCu -3'
miRNA:   3'- aGGCgGAGaCGGGCUGUAGGga------GGGG- -5'
16002 5' -61.5 NC_004065.1 + 165693 0.68 0.666187
Target:  5'- aUCCcaggGCCUCgugugaGCCCGGCuGUCCCUUgaCCa -3'
miRNA:   3'- -AGG----CGGAGa-----CGGGCUG-UAGGGAGg-GG- -5'
16002 5' -61.5 NC_004065.1 + 99302 0.68 0.655721
Target:  5'- aCCGcCCUCUccuccucguaaucGCUCGACGcgccUCCUUCUCCu -3'
miRNA:   3'- aGGC-GGAGA-------------CGGGCUGU----AGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 99239 0.68 0.647143
Target:  5'- aUCCGCCUCgcgaacGCCugcagguucuCGACGUCgucgucguccuCCUCCUCg -3'
miRNA:   3'- -AGGCGGAGa-----CGG----------GCUGUAG-----------GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93785 0.69 0.637601
Target:  5'- cCCGCUcccgguucCUGUCCGGC--UCCUCCCCc -3'
miRNA:   3'- aGGCGGa-------GACGGGCUGuaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 49680 0.69 0.628056
Target:  5'- gCCGCCggaGCa-GGCGUCCCUCCUg -3'
miRNA:   3'- aGGCGGagaCGggCUGUAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 110084 0.69 0.628056
Target:  5'- gCCGuCCUCUGCCUGcUGUUCCUCUg- -3'
miRNA:   3'- aGGC-GGAGACGGGCuGUAGGGAGGgg -5'
16002 5' -61.5 NC_004065.1 + 28516 0.69 0.599463
Target:  5'- uUCCGCCcgCUGCCUGACGagaguagcgCCCgCCgCa -3'
miRNA:   3'- -AGGCGGa-GACGGGCUGUa--------GGGaGGgG- -5'
16002 5' -61.5 NC_004065.1 + 142733 0.69 0.589966
Target:  5'- -gCGCCUC-GCUCGACuucuguagcgGUCUCUCCCg -3'
miRNA:   3'- agGCGGAGaCGGGCUG----------UAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 27058 0.7 0.58428
Target:  5'- cCCaCCUCcGCCCGuACAggcgacugugucgcgUCCuCUCCCCa -3'
miRNA:   3'- aGGcGGAGaCGGGC-UGU---------------AGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 133274 0.71 0.479513
Target:  5'- cUCCGCCgUC-GCCCuGCucgCCCUCgCCCg -3'
miRNA:   3'- -AGGCGG-AGaCGGGcUGua-GGGAG-GGG- -5'
16002 5' -61.5 NC_004065.1 + 158475 0.72 0.453428
Target:  5'- -gCGCCUCUcCCCGAacaCGUCCgUCCCg -3'
miRNA:   3'- agGCGGAGAcGGGCU---GUAGGgAGGGg -5'
16002 5' -61.5 NC_004065.1 + 206461 0.72 0.452572
Target:  5'- cCCGCCUgcCUGCCCGcccgcccGCAUCUucuuCUCCCg -3'
miRNA:   3'- aGGCGGA--GACGGGC-------UGUAGG----GAGGGg -5'
16002 5' -61.5 NC_004065.1 + 160869 0.72 0.436473
Target:  5'- cUCCGCCUCguccaGCgUCGACAg-CUUCCCCa -3'
miRNA:   3'- -AGGCGGAGa----CG-GGCUGUagGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 2154 0.72 0.428134
Target:  5'- gUCCGCCgUCUccccccGUCCGugAUCUC-CCCCa -3'
miRNA:   3'- -AGGCGG-AGA------CGGGCugUAGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 91766 0.73 0.380153
Target:  5'- gUCCGCCUCggacaCCCGA---CCCUCCUCg -3'
miRNA:   3'- -AGGCGGAGac---GGGCUguaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 90492 0.74 0.35755
Target:  5'- cUCGCgUCUuggcGUCCGACGUCCUgaUCCCCu -3'
miRNA:   3'- aGGCGgAGA----CGGGCUGUAGGG--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 229298 0.66 0.810197
Target:  5'- aCCGCUgagagacGCUCGACAUUCUUuacCCCCg -3'
miRNA:   3'- aGGCGGaga----CGGGCUGUAGGGA---GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.