miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 45143 0.68 0.647142
Target:  5'- cCCGauCCUCUcucguuCCCGGCGUCCCgccgCCCg -3'
miRNA:   3'- aGGC--GGAGAc-----GGGCUGUAGGGa---GGGg -5'
16002 5' -61.5 NC_004065.1 + 75885 0.68 0.653815
Target:  5'- gCCGCCaCcGCCCGGggcgauCGUCCCauguggacacacgaUCCCCa -3'
miRNA:   3'- aGGCGGaGaCGGGCU------GUAGGG--------------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 87559 0.68 0.656673
Target:  5'- gCCGCCUgUcCCCGcgaAUCCCUCUCg -3'
miRNA:   3'- aGGCGGAgAcGGGCug-UAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 86480 0.68 0.656673
Target:  5'- cCCGuCUUCUuaCCGAUGUCCCccUCCCa -3'
miRNA:   3'- aGGC-GGAGAcgGGCUGUAGGG--AGGGg -5'
16002 5' -61.5 NC_004065.1 + 157780 0.68 0.666187
Target:  5'- aUCUGCUUCaccagGUCCGACAUCCacaUCUgCg -3'
miRNA:   3'- -AGGCGGAGa----CGGGCUGUAGGg--AGGgG- -5'
16002 5' -61.5 NC_004065.1 + 154370 0.69 0.589965
Target:  5'- gCCGCCUCg--CCGACcUCcacuuccaccuCCUCCCCg -3'
miRNA:   3'- aGGCGGAGacgGGCUGuAG-----------GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 66403 0.7 0.557907
Target:  5'- gCCGCCgcucgauccggagCUaCCCGAgGUCCgCUCCCUa -3'
miRNA:   3'- aGGCGGa------------GAcGGGCUgUAGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 112824 0.7 0.542987
Target:  5'- cCCGCCaucacCUGCCUGGCGcaacgCCUgCCCCa -3'
miRNA:   3'- aGGCGGa----GACGGGCUGUa----GGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 90492 0.74 0.35755
Target:  5'- cUCGCgUCUuggcGUCCGACGUCCUgaUCCCCu -3'
miRNA:   3'- aGGCGgAGA----CGGGCUGUAGGG--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 91766 0.73 0.380153
Target:  5'- gUCCGCCUCggacaCCCGA---CCCUCCUCg -3'
miRNA:   3'- -AGGCGGAGac---GGGCUguaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 2154 0.72 0.428134
Target:  5'- gUCCGCCgUCUccccccGUCCGugAUCUC-CCCCa -3'
miRNA:   3'- -AGGCGG-AGA------CGGGCugUAGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 160869 0.72 0.436473
Target:  5'- cUCCGCCUCguccaGCgUCGACAg-CUUCCCCa -3'
miRNA:   3'- -AGGCGGAGa----CG-GGCUGUagGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 206461 0.72 0.452572
Target:  5'- cCCGCCUgcCUGCCCGcccgcccGCAUCUucuuCUCCCg -3'
miRNA:   3'- aGGCGGA--GACGGGC-------UGUAGG----GAGGGg -5'
16002 5' -61.5 NC_004065.1 + 158475 0.72 0.453428
Target:  5'- -gCGCCUCUcCCCGAacaCGUCCgUCCCg -3'
miRNA:   3'- agGCGGAGAcGGGCU---GUAGGgAGGGg -5'
16002 5' -61.5 NC_004065.1 + 133274 0.71 0.479513
Target:  5'- cUCCGCCgUC-GCCCuGCucgCCCUCgCCCg -3'
miRNA:   3'- -AGGCGG-AGaCGGGcUGua-GGGAG-GGG- -5'
16002 5' -61.5 NC_004065.1 + 148151 0.71 0.48837
Target:  5'- cCCGCCg-UGCCCGAgaacCAUCUCUUCaCCa -3'
miRNA:   3'- aGGCGGagACGGGCU----GUAGGGAGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 200586 0.71 0.48837
Target:  5'- cUCCGCCacCUaCCCGGCAccgucuucUCCCUgCCCu -3'
miRNA:   3'- -AGGCGGa-GAcGGGCUGU--------AGGGAgGGG- -5'
16002 5' -61.5 NC_004065.1 + 30823 0.71 0.515386
Target:  5'- aUCGCCUC-GCCaucACAUaaacCCCUCCCCu -3'
miRNA:   3'- aGGCGGAGaCGGgc-UGUA----GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 63888 0.71 0.524527
Target:  5'- gCCGCCg--GCgCCGACGUCUCUgCCg -3'
miRNA:   3'- aGGCGGagaCG-GGCUGUAGGGAgGGg -5'
16002 5' -61.5 NC_004065.1 + 167284 0.71 0.524527
Target:  5'- aUCGCCUCuUGCUgGA-GUCCCUCCUa -3'
miRNA:   3'- aGGCGGAG-ACGGgCUgUAGGGAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.