Results 101 - 118 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16002 | 5' | -61.5 | NC_004065.1 | + | 154370 | 0.69 | 0.589965 |
Target: 5'- gCCGCCUCg--CCGACcUCcacuuccaccuCCUCCCCg -3' miRNA: 3'- aGGCGGAGacgGGCUGuAG-----------GGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 210334 | 0.69 | 0.595661 |
Target: 5'- cUCCGCgUUUcagccguuacccgGCCCGGCAUacgccaccuuccaaCCCUUCCCu -3' miRNA: 3'- -AGGCGgAGA-------------CGGGCUGUA--------------GGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 161724 | 0.69 | 0.599463 |
Target: 5'- aCCGUCUCgaaGUCCGuCGccgagCCCUCCUCg -3' miRNA: 3'- aGGCGGAGa--CGGGCuGUa----GGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 168801 | 0.68 | 0.675677 |
Target: 5'- cUCCGcCCUCUGCUCcuucgccauCAUcCCCUCgCCg -3' miRNA: 3'- -AGGC-GGAGACGGGcu-------GUA-GGGAGgGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 120892 | 0.68 | 0.675677 |
Target: 5'- aCCGCCgucaCCCGcCGUCCCcgccaccuccgUCCCCu -3' miRNA: 3'- aGGCGGagacGGGCuGUAGGG-----------AGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 158056 | 0.68 | 0.675677 |
Target: 5'- gUCGCCUCcgggcUGCCCGGCuccaccggcggcGUCgCCUCCgaCCa -3' miRNA: 3'- aGGCGGAG-----ACGGGCUG------------UAG-GGAGG--GG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 157780 | 0.68 | 0.666187 |
Target: 5'- aUCUGCUUCaccagGUCCGACAUCCacaUCUgCg -3' miRNA: 3'- -AGGCGGAGa----CGGGCUGUAGGg--AGGgG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 86480 | 0.68 | 0.656673 |
Target: 5'- cCCGuCUUCUuaCCGAUGUCCCccUCCCa -3' miRNA: 3'- aGGC-GGAGAcgGGCUGUAGGG--AGGGg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 87559 | 0.68 | 0.656673 |
Target: 5'- gCCGCCUgUcCCCGcgaAUCCCUCUCg -3' miRNA: 3'- aGGCGGAgAcGGGCug-UAGGGAGGGg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 75885 | 0.68 | 0.653815 |
Target: 5'- gCCGCCaCcGCCCGGggcgauCGUCCCauguggacacacgaUCCCCa -3' miRNA: 3'- aGGCGGaGaCGGGCU------GUAGGG--------------AGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 45143 | 0.68 | 0.647142 |
Target: 5'- cCCGauCCUCUcucguuCCCGGCGUCCCgccgCCCg -3' miRNA: 3'- aGGC--GGAGAc-----GGGCUGUAGGGa---GGGg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 101287 | 0.68 | 0.647142 |
Target: 5'- gCUGCCgacggCUGCCuCGGCGgccagccgCCuCUCCCUg -3' miRNA: 3'- aGGCGGa----GACGG-GCUGUa-------GG-GAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 165105 | 0.69 | 0.618514 |
Target: 5'- gUCGUCUCUGaggCGGCGUCCCgCCCg -3' miRNA: 3'- aGGCGGAGACgg-GCUGUAGGGaGGGg -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 79675 | 0.69 | 0.618514 |
Target: 5'- -gUGCCgaacgUGCCCGACAUCCgcaUCCaCCg -3' miRNA: 3'- agGCGGag---ACGGGCUGUAGGg--AGG-GG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 59653 | 0.69 | 0.612792 |
Target: 5'- cUCCGCuacCUCUGCCuuucaugcccacgguCGACAUCCCga-CCa -3' miRNA: 3'- -AGGCG---GAGACGG---------------GCUGUAGGGaggGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 160237 | 0.69 | 0.608981 |
Target: 5'- cUCCGCCUC-GCUCuGCAUCCUcuUCUUCa -3' miRNA: 3'- -AGGCGGAGaCGGGcUGUAGGG--AGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 202641 | 0.69 | 0.599463 |
Target: 5'- gCCGCCgcugCUGCugcugcugcugCCGGCucUUCUUCCCCg -3' miRNA: 3'- aGGCGGa---GACG-----------GGCUGu-AGGGAGGGG- -5' |
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16002 | 5' | -61.5 | NC_004065.1 | + | 116126 | 0.77 | 0.235749 |
Target: 5'- cUCCGcCCUCUcGUCCGGCGUaagagccgcgaaCCUCCCCa -3' miRNA: 3'- -AGGC-GGAGA-CGGGCUGUAg-----------GGAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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