miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 165105 0.69 0.618514
Target:  5'- gUCGUCUCUGaggCGGCGUCCCgCCCg -3'
miRNA:   3'- aGGCGGAGACgg-GCUGUAGGGaGGGg -5'
16002 5' -61.5 NC_004065.1 + 160237 0.69 0.608981
Target:  5'- cUCCGCCUC-GCUCuGCAUCCUcuUCUUCa -3'
miRNA:   3'- -AGGCGGAGaCGGGcUGUAGGG--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 30823 0.71 0.515386
Target:  5'- aUCGCCUC-GCCaucACAUaaacCCCUCCCCu -3'
miRNA:   3'- aGGCGGAGaCGGgc-UGUA----GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 2154 0.72 0.428134
Target:  5'- gUCCGCCgUCUccccccGUCCGugAUCUC-CCCCa -3'
miRNA:   3'- -AGGCGG-AGA------CGGGCugUAGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 109819 0.68 0.694556
Target:  5'- gUCCGCCcaagaagaUCggcagggcgaGCgCGGCGUCgCUCCCCu -3'
miRNA:   3'- -AGGCGG--------AGa---------CGgGCUGUAGgGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 86480 0.68 0.656673
Target:  5'- cCCGuCUUCUuaCCGAUGUCCCccUCCCa -3'
miRNA:   3'- aGGC-GGAGAcgGGCUGUAGGG--AGGGg -5'
16002 5' -61.5 NC_004065.1 + 161724 0.69 0.599463
Target:  5'- aCCGUCUCgaaGUCCGuCGccgagCCCUCCUCg -3'
miRNA:   3'- aGGCGGAGa--CGGGCuGUa----GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 91766 0.73 0.380153
Target:  5'- gUCCGCCUCggacaCCCGA---CCCUCCUCg -3'
miRNA:   3'- -AGGCGGAGac---GGGCUguaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 87559 0.68 0.656673
Target:  5'- gCCGCCUgUcCCCGcgaAUCCCUCUCg -3'
miRNA:   3'- aGGCGGAgAcGGGCug-UAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 90492 0.74 0.35755
Target:  5'- cUCGCgUCUuggcGUCCGACGUCCUgaUCCCCu -3'
miRNA:   3'- aGGCGgAGA----CGGGCUGUAGGG--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 202641 0.69 0.599463
Target:  5'- gCCGCCgcugCUGCugcugcugcugCCGGCucUUCUUCCCCg -3'
miRNA:   3'- aGGCGGa---GACG-----------GGCUGu-AGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 101287 0.68 0.647142
Target:  5'- gCUGCCgacggCUGCCuCGGCGgccagccgCCuCUCCCUg -3'
miRNA:   3'- aGGCGGa----GACGG-GCUGUa-------GG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 66403 0.7 0.557907
Target:  5'- gCCGCCgcucgauccggagCUaCCCGAgGUCCgCUCCCUa -3'
miRNA:   3'- aGGCGGa------------GAcGGGCUgUAGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 63888 0.71 0.524527
Target:  5'- gCCGCCg--GCgCCGACGUCUCUgCCg -3'
miRNA:   3'- aGGCGGagaCG-GGCUGUAGGGAgGGg -5'
16002 5' -61.5 NC_004065.1 + 133274 0.71 0.479513
Target:  5'- cUCCGCCgUC-GCCCuGCucgCCCUCgCCCg -3'
miRNA:   3'- -AGGCGG-AGaCGGGcUGua-GGGAG-GGG- -5'
16002 5' -61.5 NC_004065.1 + 160869 0.72 0.436473
Target:  5'- cUCCGCCUCguccaGCgUCGACAg-CUUCCCCa -3'
miRNA:   3'- -AGGCGGAGa----CG-GGCUGUagGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 6944 0.67 0.722517
Target:  5'- gUCCGCCgucggaagCUGCgUCGACGgagUCCUCUCa -3'
miRNA:   3'- -AGGCGGa-------GACG-GGCUGUa--GGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 111300 0.67 0.703932
Target:  5'- aCUGCgagacCUGCCgGACAcgacgcuccCCCUCCCCa -3'
miRNA:   3'- aGGCGga---GACGGgCUGUa--------GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 168801 0.68 0.675677
Target:  5'- cUCCGcCCUCUGCUCcuucgccauCAUcCCCUCgCCg -3'
miRNA:   3'- -AGGC-GGAGACGGGcu-------GUA-GGGAGgGG- -5'
16002 5' -61.5 NC_004065.1 + 157780 0.68 0.666187
Target:  5'- aUCUGCUUCaccagGUCCGACAUCCacaUCUgCg -3'
miRNA:   3'- -AGGCGGAGa----CGGGCUGUAGGg--AGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.