miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 150799 0.67 0.731712
Target:  5'- aUCCGCUggUGCgCGAUGUCCaggcucaCCCCg -3'
miRNA:   3'- -AGGCGGagACGgGCUGUAGGga-----GGGG- -5'
16002 5' -61.5 NC_004065.1 + 87559 0.68 0.656673
Target:  5'- gCCGCCUgUcCCCGcgaAUCCCUCUCg -3'
miRNA:   3'- aGGCGGAgAcGGGCug-UAGGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 63888 0.71 0.524527
Target:  5'- gCCGCCg--GCgCCGACGUCUCUgCCg -3'
miRNA:   3'- aGGCGGagaCG-GGCUGUAGGGAgGGg -5'
16002 5' -61.5 NC_004065.1 + 29477 0.67 0.731712
Target:  5'- cCCGCUgCcGCCCGuCG-CCCUCgCCa -3'
miRNA:   3'- aGGCGGaGaCGGGCuGUaGGGAGgGG- -5'
16002 5' -61.5 NC_004065.1 + 30823 0.71 0.515386
Target:  5'- aUCGCCUC-GCCaucACAUaaacCCCUCCCCu -3'
miRNA:   3'- aGGCGGAGaCGGgc-UGUA----GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 94470 0.66 0.801944
Target:  5'- gCCGCCUC--CCCGuCGUCCg-CCCg -3'
miRNA:   3'- aGGCGGAGacGGGCuGUAGGgaGGGg -5'
16002 5' -61.5 NC_004065.1 + 112824 0.7 0.542987
Target:  5'- cCCGCCaucacCUGCCUGGCGcaacgCCUgCCCCa -3'
miRNA:   3'- aGGCGGa----GACGGGCUGUa----GGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 171462 0.66 0.793558
Target:  5'- aUCCGCUggaUC-GCgCCGaACAUCCg-CCCCa -3'
miRNA:   3'- -AGGCGG---AGaCG-GGC-UGUAGGgaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 177234 0.66 0.793558
Target:  5'- -gCGCgCUCUGCUCGcCucugCUUUCCCCu -3'
miRNA:   3'- agGCG-GAGACGGGCuGua--GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 35617 0.66 0.793558
Target:  5'- cUCCGUCUggaacGCCCGcCGcUCUgUCCCCa -3'
miRNA:   3'- -AGGCGGAga---CGGGCuGU-AGGgAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 9559 0.66 0.785045
Target:  5'- gCCGUCUCU-CCCGAgAUCCgUuucgacgaUCCCg -3'
miRNA:   3'- aGGCGGAGAcGGGCUgUAGGgA--------GGGG- -5'
16002 5' -61.5 NC_004065.1 + 68203 0.66 0.758817
Target:  5'- gUCCGCC-C-GCCCGucCGUCCgUCCa- -3'
miRNA:   3'- -AGGCGGaGaCGGGCu-GUAGGgAGGgg -5'
16002 5' -61.5 NC_004065.1 + 163197 0.67 0.739924
Target:  5'- cUCCGCCUCguaCCGgaaaucaacggacGCGUCCCUCggacgUCCg -3'
miRNA:   3'- -AGGCGGAGacgGGC-------------UGUAGGGAG-----GGG- -5'
16002 5' -61.5 NC_004065.1 + 6944 0.67 0.722517
Target:  5'- gUCCGCCgucggaagCUGCgUCGACGgagUCCUCUCa -3'
miRNA:   3'- -AGGCGGa-------GACG-GGCUGUa--GGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 111300 0.67 0.703932
Target:  5'- aCUGCgagacCUGCCgGACAcgacgcuccCCCUCCCCa -3'
miRNA:   3'- aGGCGga---GACGGgCUGUa--------GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 168801 0.68 0.675677
Target:  5'- cUCCGcCCUCUGCUCcuucgccauCAUcCCCUCgCCg -3'
miRNA:   3'- -AGGC-GGAGACGGGcu-------GUA-GGGAGgGG- -5'
16002 5' -61.5 NC_004065.1 + 157780 0.68 0.666187
Target:  5'- aUCUGCUUCaccagGUCCGACAUCCacaUCUgCg -3'
miRNA:   3'- -AGGCGGAGa----CGGGCUGUAGGg--AGGgG- -5'
16002 5' -61.5 NC_004065.1 + 101287 0.68 0.647142
Target:  5'- gCUGCCgacggCUGCCuCGGCGgccagccgCCuCUCCCUg -3'
miRNA:   3'- aGGCGGa----GACGG-GCUGUa-------GG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 59653 0.69 0.612792
Target:  5'- cUCCGCuacCUCUGCCuuucaugcccacgguCGACAUCCCga-CCa -3'
miRNA:   3'- -AGGCG---GAGACGG---------------GCUGUAGGGaggGG- -5'
16002 5' -61.5 NC_004065.1 + 210334 0.69 0.595661
Target:  5'- cUCCGCgUUUcagccguuacccgGCCCGGCAUacgccaccuuccaaCCCUUCCCu -3'
miRNA:   3'- -AGGCGgAGA-------------CGGGCUGUA--------------GGGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.