miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 150799 0.67 0.731712
Target:  5'- aUCCGCUggUGCgCGAUGUCCaggcucaCCCCg -3'
miRNA:   3'- -AGGCGGagACGgGCUGUAGGga-----GGGG- -5'
16002 5' -61.5 NC_004065.1 + 29477 0.67 0.731712
Target:  5'- cCCGCUgCcGCCCGuCG-CCCUCgCCa -3'
miRNA:   3'- aGGCGGaGaCGGGCuGUaGGGAGgGG- -5'
16002 5' -61.5 NC_004065.1 + 6944 0.67 0.722517
Target:  5'- gUCCGCCgucggaagCUGCgUCGACGgagUCCUCUCa -3'
miRNA:   3'- -AGGCGGa-------GACG-GGCUGUa--GGGAGGGg -5'
16002 5' -61.5 NC_004065.1 + 8042 0.66 0.776412
Target:  5'- aUCGUCUUcggGuCCCGACGUCgCCUaCCUCa -3'
miRNA:   3'- aGGCGGAGa--C-GGGCUGUAG-GGA-GGGG- -5'
16002 5' -61.5 NC_004065.1 + 109819 0.68 0.694556
Target:  5'- gUCCGCCcaagaagaUCggcagggcgaGCgCGGCGUCgCUCCCCu -3'
miRNA:   3'- -AGGCGG--------AGa---------CGgGCUGUAGgGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 111300 0.67 0.703932
Target:  5'- aCUGCgagacCUGCCgGACAcgacgcuccCCCUCCCCa -3'
miRNA:   3'- aGGCGga---GACGGgCUGUa--------GGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 186750 0.73 0.387898
Target:  5'- gUCGCCac-GCCgGACAUCCC-CCCCu -3'
miRNA:   3'- aGGCGGagaCGGgCUGUAGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 67713 0.68 0.685136
Target:  5'- gCCGCCUCUGCCUcuGCuUCUguUUCUCCu -3'
miRNA:   3'- aGGCGGAGACGGGc-UGuAGG--GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 45241 0.67 0.739924
Target:  5'- gUCCuCCUCcGCCCGuCGcgucgucUCCUUCUCCu -3'
miRNA:   3'- -AGGcGGAGaCGGGCuGU-------AGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 120349 0.67 0.737194
Target:  5'- cUCCaCCUCgggguacgucggcGCCUGACGUUCgCUCUCCg -3'
miRNA:   3'- -AGGcGGAGa------------CGGGCUGUAGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 96418 0.66 0.810198
Target:  5'- gUCCGCCUCgaaaucgcGCUCG-CAaCgCUCCUCg -3'
miRNA:   3'- -AGGCGGAGa-------CGGGCuGUaGgGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 111382 0.67 0.702997
Target:  5'- cCCGCuCUCaccagccaggucaUGCgCGACcgggccggAUUCCUCCCCg -3'
miRNA:   3'- aGGCG-GAG-------------ACGgGCUG--------UAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93643 0.67 0.722517
Target:  5'- aCCGaCCUCggaucCCCG-CA-CCCUUCCCg -3'
miRNA:   3'- aGGC-GGAGac---GGGCuGUaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 110403 0.66 0.810198
Target:  5'- -aCGCCacgGCCgaCGGCGUCuCCUCCgCCg -3'
miRNA:   3'- agGCGGagaCGG--GCUGUAG-GGAGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 139236 0.66 0.810198
Target:  5'- gUCaCGUC-CUGCCgGgacagcGCGUCgCCUCCCUg -3'
miRNA:   3'- -AG-GCGGaGACGGgC------UGUAG-GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 105043 0.66 0.810198
Target:  5'- -aCGCgUCUGUCCGGgGUCCUcagUUCCa -3'
miRNA:   3'- agGCGgAGACGGGCUgUAGGG---AGGGg -5'
16002 5' -61.5 NC_004065.1 + 125698 0.68 0.694556
Target:  5'- -gCGCC-CUGaCCCGAuCAUCCC-CCUg -3'
miRNA:   3'- agGCGGaGAC-GGGCU-GUAGGGaGGGg -5'
16002 5' -61.5 NC_004065.1 + 27058 0.7 0.58428
Target:  5'- cCCaCCUCcGCCCGuACAggcgacugugucgcgUCCuCUCCCCa -3'
miRNA:   3'- aGGcGGAGaCGGGC-UGU---------------AGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93412 0.7 0.570115
Target:  5'- gCCGCCUCggaccagcGCCCcGCAcCCCacccggaUCCCCg -3'
miRNA:   3'- aGGCGGAGa-------CGGGcUGUaGGG-------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 38815 0.7 0.561656
Target:  5'- aUCCGCCUCU-CgCUGAUcUCCCcgacCCCCa -3'
miRNA:   3'- -AGGCGGAGAcG-GGCUGuAGGGa---GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.