miRNA display CGI


Results 81 - 100 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 93550 0.66 0.784187
Target:  5'- aCCgGCCUCggcucCCCGGCuuUCCggcucggCUCCCCa -3'
miRNA:   3'- aGG-CGGAGac---GGGCUGu-AGG-------GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 55153 0.66 0.785045
Target:  5'- aCCGCCguu-CCCGGCccUCuUCUCCCCg -3'
miRNA:   3'- aGGCGGagacGGGCUGu-AG-GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 18616 0.66 0.793558
Target:  5'- aCCGCCcagGCCC-ACGUUUC-CCCCg -3'
miRNA:   3'- aGGCGGagaCGGGcUGUAGGGaGGGG- -5'
16002 5' -61.5 NC_004065.1 + 146903 0.66 0.793558
Target:  5'- -aCGCCUC-GCCC-ACAg--CUCCCCg -3'
miRNA:   3'- agGCGGAGaCGGGcUGUaggGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 143467 0.66 0.801945
Target:  5'- cUCUGCgUCgucgugacGCCCGuGCGUCUggaUCCCCa -3'
miRNA:   3'- -AGGCGgAGa-------CGGGC-UGUAGGg--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 126790 0.66 0.801945
Target:  5'- aCCGUCgUCUGUCgCGAgGuggggaUCCCggCCCCg -3'
miRNA:   3'- aGGCGG-AGACGG-GCUgU------AGGGa-GGGG- -5'
16002 5' -61.5 NC_004065.1 + 190593 0.66 0.801945
Target:  5'- aUCUGaguaUCUGUaucaUGGCGUCCCggCCCCg -3'
miRNA:   3'- -AGGCgg--AGACGg---GCUGUAGGGa-GGGG- -5'
16002 5' -61.5 NC_004065.1 + 110403 0.66 0.810198
Target:  5'- -aCGCCacgGCCgaCGGCGUCuCCUCCgCCg -3'
miRNA:   3'- agGCGGagaCGG--GCUGUAG-GGAGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 64656 0.66 0.809378
Target:  5'- gUCCGCCgugcuggccgagaUCUGCaccaCCGACAUCCaccagaUCCa- -3'
miRNA:   3'- -AGGCGG-------------AGACG----GGCUGUAGGg-----AGGgg -5'
16002 5' -61.5 NC_004065.1 + 191612 0.66 0.776412
Target:  5'- -aCGCCUCU-CCCGcgaaGUCCgugUCCCCg -3'
miRNA:   3'- agGCGGAGAcGGGCug--UAGGg--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 96418 0.66 0.810198
Target:  5'- gUCCGCCUCgaaaucgcGCUCG-CAaCgCUCCUCg -3'
miRNA:   3'- -AGGCGGAGa-------CGGGCuGUaGgGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 218213 0.68 0.675677
Target:  5'- aCCGaCUCcGUCCGGCAUCCaauaaaaaCCCCu -3'
miRNA:   3'- aGGCgGAGaCGGGCUGUAGGga------GGGG- -5'
16002 5' -61.5 NC_004065.1 + 67713 0.68 0.685136
Target:  5'- gCCGCCUCUGCCUcuGCuUCUguUUCUCCu -3'
miRNA:   3'- aGGCGGAGACGGGc-UGuAGG--GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 125698 0.68 0.694556
Target:  5'- -gCGCC-CUGaCCCGAuCAUCCC-CCUg -3'
miRNA:   3'- agGCGGaGAC-GGGCU-GUAGGGaGGGg -5'
16002 5' -61.5 NC_004065.1 + 111382 0.67 0.702997
Target:  5'- cCCGCuCUCaccagccaggucaUGCgCGACcgggccggAUUCCUCCCCg -3'
miRNA:   3'- aGGCG-GAG-------------ACGgGCUG--------UAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93643 0.67 0.722517
Target:  5'- aCCGaCCUCggaucCCCG-CA-CCCUUCCCg -3'
miRNA:   3'- aGGC-GGAGac---GGGCuGUaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 120349 0.67 0.737194
Target:  5'- cUCCaCCUCgggguacgucggcGCCUGACGUUCgCUCUCCg -3'
miRNA:   3'- -AGGcGGAGa------------CGGGCUGUAGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 45241 0.67 0.739924
Target:  5'- gUCCuCCUCcGCCCGuCGcgucgucUCCUUCUCCu -3'
miRNA:   3'- -AGGcGGAGaCGGGCuGU-------AGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 122919 0.67 0.740832
Target:  5'- aCCGCgccgaUCaGCCgCGACAgcuUCCCcacgUCCCCg -3'
miRNA:   3'- aGGCGg----AGaCGG-GCUGU---AGGG----AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 139236 0.66 0.810198
Target:  5'- gUCaCGUC-CUGCCgGgacagcGCGUCgCCUCCCUg -3'
miRNA:   3'- -AG-GCGGaGACGGgC------UGUAG-GGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.