miRNA display CGI


Results 101 - 118 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16002 5' -61.5 NC_004065.1 + 64656 0.66 0.809378
Target:  5'- gUCCGCCgugcuggccgagaUCUGCaccaCCGACAUCCaccagaUCCa- -3'
miRNA:   3'- -AGGCGG-------------AGACG----GGCUGUAGGg-----AGGgg -5'
16002 5' -61.5 NC_004065.1 + 96418 0.66 0.810198
Target:  5'- gUCCGCCUCgaaaucgcGCUCG-CAaCgCUCCUCg -3'
miRNA:   3'- -AGGCGGAGa-------CGGGCuGUaGgGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 105043 0.66 0.810198
Target:  5'- -aCGCgUCUGUCCGGgGUCCUcagUUCCa -3'
miRNA:   3'- agGCGgAGACGGGCUgUAGGG---AGGGg -5'
16002 5' -61.5 NC_004065.1 + 139236 0.66 0.810198
Target:  5'- gUCaCGUC-CUGCCgGgacagcGCGUCgCCUCCCUg -3'
miRNA:   3'- -AG-GCGGaGACGGgC------UGUAG-GGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 191612 0.66 0.776412
Target:  5'- -aCGCCUCU-CCCGcgaaGUCCgugUCCCCg -3'
miRNA:   3'- agGCGGAGAcGGGCug--UAGGg--AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 149247 0.66 0.776412
Target:  5'- gCCGCCgUC-GCCUG-C-UCCCUCUCUa -3'
miRNA:   3'- aGGCGG-AGaCGGGCuGuAGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 93643 0.67 0.722517
Target:  5'- aCCGaCCUCggaucCCCG-CA-CCCUUCCCg -3'
miRNA:   3'- aGGC-GGAGac---GGGCuGUaGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 120349 0.67 0.737194
Target:  5'- cUCCaCCUCgggguacgucggcGCCUGACGUUCgCUCUCCg -3'
miRNA:   3'- -AGGcGGAGa------------CGGGCUGUAGG-GAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 45241 0.67 0.739924
Target:  5'- gUCCuCCUCcGCCCGuCGcgucgucUCCUUCUCCu -3'
miRNA:   3'- -AGGcGGAGaCGGGCuGU-------AGGGAGGGG- -5'
16002 5' -61.5 NC_004065.1 + 122919 0.67 0.740832
Target:  5'- aCCGCgccgaUCaGCCgCGACAgcuUCCCcacgUCCCCg -3'
miRNA:   3'- aGGCGg----AGaCGG-GCUGU---AGGG----AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 171266 0.67 0.740832
Target:  5'- gUCGCCUCUuuccaaucggGCCCGcCGUCUCUagUCCUg -3'
miRNA:   3'- aGGCGGAGA----------CGGGCuGUAGGGA--GGGG- -5'
16002 5' -61.5 NC_004065.1 + 135302 0.67 0.74897
Target:  5'- cUCCGCCgccgacuUCgGCCCGcucgaGCcgCCCUCCa- -3'
miRNA:   3'- -AGGCGG-------AGaCGGGC-----UGuaGGGAGGgg -5'
16002 5' -61.5 NC_004065.1 + 43321 0.66 0.758817
Target:  5'- gUCGUCaUCUgGCCCGGCGgggacgCCCcacgcgccgcgUCCCCg -3'
miRNA:   3'- aGGCGG-AGA-CGGGCUGUa-----GGG-----------AGGGG- -5'
16002 5' -61.5 NC_004065.1 + 198368 0.66 0.758817
Target:  5'- cUUCGCCaggaaCaGCgCCGACGUCCCguagCCCg -3'
miRNA:   3'- -AGGCGGa----GaCG-GGCUGUAGGGa---GGGg -5'
16002 5' -61.5 NC_004065.1 + 90181 0.66 0.767667
Target:  5'- cUCCGCCgUC-GCCCG-CcUCCCgggaCUCCa -3'
miRNA:   3'- -AGGCGG-AGaCGGGCuGuAGGGa---GGGG- -5'
16002 5' -61.5 NC_004065.1 + 86747 0.66 0.776412
Target:  5'- gCCGCCUCgGCCCuugaagcuGCcgCCC-CCgCCg -3'
miRNA:   3'- aGGCGGAGaCGGGc-------UGuaGGGaGG-GG- -5'
16002 5' -61.5 NC_004065.1 + 100445 0.66 0.776412
Target:  5'- gCCGCUUCU--CCGGCAUCUC-CaCCCg -3'
miRNA:   3'- aGGCGGAGAcgGGCUGUAGGGaG-GGG- -5'
16002 5' -61.5 NC_004065.1 + 110403 0.66 0.810198
Target:  5'- -aCGCCacgGCCgaCGGCGUCuCCUCCgCCg -3'
miRNA:   3'- agGCGGagaCGG--GCUGUAG-GGAGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.