miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16003 3' -56.6 NC_004065.1 + 94454 0.66 0.954811
Target:  5'- uUCgaaGGagGUgaCgGCCGCCUCCCCGu -3'
miRNA:   3'- cAGa--UUagCAgaGgCGGUGGAGGGGC- -5'
16003 3' -56.6 NC_004065.1 + 176513 0.66 0.954811
Target:  5'- uGUCUcggacGAUCcUCUCCGaugaagaggucaCCAUCUUCCCGg -3'
miRNA:   3'- -CAGA-----UUAGcAGAGGC------------GGUGGAGGGGC- -5'
16003 3' -56.6 NC_004065.1 + 151505 0.66 0.950948
Target:  5'- ---cGGUCGUCUCCgacaucGCCAuCCgcgCCCUGg -3'
miRNA:   3'- cagaUUAGCAGAGG------CGGU-GGa--GGGGC- -5'
16003 3' -56.6 NC_004065.1 + 20643 0.66 0.950948
Target:  5'- aUCgc--CGUCUCCGUCGCaggCCUCGg -3'
miRNA:   3'- cAGauuaGCAGAGGCGGUGga-GGGGC- -5'
16003 3' -56.6 NC_004065.1 + 212741 0.66 0.95055
Target:  5'- -----cUCGUCauaaccuUCCccgaguGCCACCUCCCCa -3'
miRNA:   3'- cagauuAGCAG-------AGG------CGGUGGAGGGGc -5'
16003 3' -56.6 NC_004065.1 + 225335 0.66 0.946871
Target:  5'- aUCccgGAUCGUUagugUCCGCCGCCggagUCCUCu -3'
miRNA:   3'- cAGa--UUAGCAG----AGGCGGUGG----AGGGGc -5'
16003 3' -56.6 NC_004065.1 + 166475 0.66 0.946871
Target:  5'- ------aCGUCUCCGCCGCCaCCaaGa -3'
miRNA:   3'- cagauuaGCAGAGGCGGUGGaGGggC- -5'
16003 3' -56.6 NC_004065.1 + 185070 0.66 0.946871
Target:  5'- uGUCgaaGGUCGgugugcUCUUCGCCGucuCUUCCCCGu -3'
miRNA:   3'- -CAGa--UUAGC------AGAGGCGGU---GGAGGGGC- -5'
16003 3' -56.6 NC_004065.1 + 131634 0.66 0.942576
Target:  5'- cUCUcAUCGccCUCCucGCCACCaCCCCa -3'
miRNA:   3'- cAGAuUAGCa-GAGG--CGGUGGaGGGGc -5'
16003 3' -56.6 NC_004065.1 + 53548 0.66 0.940798
Target:  5'- cGUCccggUGcCUCCGCCucugcccgacaucCCUCCCCGa -3'
miRNA:   3'- -CAGauuaGCaGAGGCGGu------------GGAGGGGC- -5'
16003 3' -56.6 NC_004065.1 + 151123 0.66 0.938063
Target:  5'- aGUCUcGUCGUCUCCuugcaggugguGCaCGCgCUCCgCGa -3'
miRNA:   3'- -CAGAuUAGCAGAGG-----------CG-GUG-GAGGgGC- -5'
16003 3' -56.6 NC_004065.1 + 116075 0.66 0.933328
Target:  5'- aUCgg--CGUCUCCGUC-CCagcCCCCGa -3'
miRNA:   3'- cAGauuaGCAGAGGCGGuGGa--GGGGC- -5'
16003 3' -56.6 NC_004065.1 + 133238 0.67 0.928371
Target:  5'- cGUCcaaagAGUCGUCgaagacggCCgcgauGCCGCCUCCgCCGu -3'
miRNA:   3'- -CAGa----UUAGCAGa-------GG-----CGGUGGAGG-GGC- -5'
16003 3' -56.6 NC_004065.1 + 35174 0.67 0.928371
Target:  5'- ---aGAUCGUgUCCGCCGCCguggucggCCUgGa -3'
miRNA:   3'- cagaUUAGCAgAGGCGGUGGa-------GGGgC- -5'
16003 3' -56.6 NC_004065.1 + 136406 0.67 0.923191
Target:  5'- cGUCUAcgugaugCGUCUCCugGCCcCCcucaUCCCCGu -3'
miRNA:   3'- -CAGAUua-----GCAGAGG--CGGuGG----AGGGGC- -5'
16003 3' -56.6 NC_004065.1 + 154543 0.67 0.923191
Target:  5'- -cCUGAUCcUCgCCGCCGCCaUCgCCCu -3'
miRNA:   3'- caGAUUAGcAGaGGCGGUGG-AG-GGGc -5'
16003 3' -56.6 NC_004065.1 + 154214 0.67 0.918339
Target:  5'- aUCU-GUCGUCgugccaggugccucgCCGCCGCUcCCCCu -3'
miRNA:   3'- cAGAuUAGCAGa--------------GGCGGUGGaGGGGc -5'
16003 3' -56.6 NC_004065.1 + 56697 0.67 0.917789
Target:  5'- -aCUAAgaa-CUCUGCCACCUCaCCCu -3'
miRNA:   3'- caGAUUagcaGAGGCGGUGGAG-GGGc -5'
16003 3' -56.6 NC_004065.1 + 57760 0.67 0.917789
Target:  5'- ---aGAUCGUCgucgCCGCCGCCgucgCuCUCGg -3'
miRNA:   3'- cagaUUAGCAGa---GGCGGUGGa---G-GGGC- -5'
16003 3' -56.6 NC_004065.1 + 64026 0.67 0.917789
Target:  5'- cGUCc-GUCGUUUCCuGCagCACgUCCCCGa -3'
miRNA:   3'- -CAGauUAGCAGAGG-CG--GUGgAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.