miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16003 5' -53.5 NC_004065.1 + 170324 0.65 0.990506
Target:  5'- cCGCGGCCGcucggcgcccUucuacgacgacucgGAcGACGAGGACGAGg- -3'
miRNA:   3'- -GUGCCGGC----------A--------------CUaCUGCUCUUGCUCau -5'
16003 5' -53.5 NC_004065.1 + 136636 0.66 0.990136
Target:  5'- gGCGGuCCGgagcggcguggauccUGGUGGCGAGcGACGGGc- -3'
miRNA:   3'- gUGCC-GGC---------------ACUACUGCUC-UUGCUCau -5'
16003 5' -53.5 NC_004065.1 + 115582 0.66 0.989624
Target:  5'- gACGGCgGUGGUGGUGGcGGCGGGa- -3'
miRNA:   3'- gUGCCGgCACUACUGCUcUUGCUCau -5'
16003 5' -53.5 NC_004065.1 + 185424 0.66 0.989624
Target:  5'- gAUGGUgGUGAUggugggagGAgGAGGACGAGg- -3'
miRNA:   3'- gUGCCGgCACUA--------CUgCUCUUGCUCau -5'
16003 5' -53.5 NC_004065.1 + 105441 0.66 0.989624
Target:  5'- uGCGGgaCGUGGcgacgGACGAGAACGuGa- -3'
miRNA:   3'- gUGCCg-GCACUa----CUGCUCUUGCuCau -5'
16003 5' -53.5 NC_004065.1 + 99624 0.66 0.989624
Target:  5'- gACGGUCGcGAUacccGGCGGGGACGAu-- -3'
miRNA:   3'- gUGCCGGCaCUA----CUGCUCUUGCUcau -5'
16003 5' -53.5 NC_004065.1 + 27881 0.66 0.989226
Target:  5'- gACGGCCGgGAccuccguccgauccUGcCGAcGGGCGAGUGg -3'
miRNA:   3'- gUGCCGGCaCU--------------ACuGCU-CUUGCUCAU- -5'
16003 5' -53.5 NC_004065.1 + 111583 0.66 0.988253
Target:  5'- -cCGGCCGagGAaGACGAGGACGccgccGUGu -3'
miRNA:   3'- guGCCGGCa-CUaCUGCUCUUGCu----CAU- -5'
16003 5' -53.5 NC_004065.1 + 31870 0.66 0.986746
Target:  5'- uCGgGGCCGUGuacagccugcugGUGuacuCGAGAGCGGGc- -3'
miRNA:   3'- -GUgCCGGCAC------------UACu---GCUCUUGCUCau -5'
16003 5' -53.5 NC_004065.1 + 187398 0.66 0.986746
Target:  5'- gCGCGGCgcggUGUGgcGuCGAGGGCGAGc- -3'
miRNA:   3'- -GUGCCG----GCACuaCuGCUCUUGCUCau -5'
16003 5' -53.5 NC_004065.1 + 105003 0.66 0.986746
Target:  5'- gGCGGCUGUG-UGACGAGccgcugcuGGCGuacGUGa -3'
miRNA:   3'- gUGCCGGCACuACUGCUC--------UUGCu--CAU- -5'
16003 5' -53.5 NC_004065.1 + 200967 0.66 0.986587
Target:  5'- gGCGGCuccaggaucggugCGUGGUGACGGGucGCGAc-- -3'
miRNA:   3'- gUGCCG-------------GCACUACUGCUCu-UGCUcau -5'
16003 5' -53.5 NC_004065.1 + 25737 0.66 0.985094
Target:  5'- aACGGCCGaaGAcgucGACGAGGACcaGGGUGu -3'
miRNA:   3'- gUGCCGGCa-CUa---CUGCUCUUG--CUCAU- -5'
16003 5' -53.5 NC_004065.1 + 153716 0.66 0.985094
Target:  5'- aCGCGGCg--GAUccuccggcucGACGAGAACGAGc- -3'
miRNA:   3'- -GUGCCGgcaCUA----------CUGCUCUUGCUCau -5'
16003 5' -53.5 NC_004065.1 + 48527 0.66 0.985094
Target:  5'- cCACGGCCGUcacuugGAUGAGAAcCGuGUc -3'
miRNA:   3'- -GUGCCGGCAcua---CUGCUCUU-GCuCAu -5'
16003 5' -53.5 NC_004065.1 + 195257 0.66 0.984921
Target:  5'- cCGCGGCCGcGAUcuggcccGGCGGGAAacUGAGg- -3'
miRNA:   3'- -GUGCCGGCaCUA-------CUGCUCUU--GCUCau -5'
16003 5' -53.5 NC_004065.1 + 138152 0.66 0.984921
Target:  5'- aGCGGCCGgcgguguuuacgcUGGUGGCGAGGAUc---- -3'
miRNA:   3'- gUGCCGGC-------------ACUACUGCUCUUGcucau -5'
16003 5' -53.5 NC_004065.1 + 71570 0.66 0.98329
Target:  5'- --aGGCgCGUGAUGACG-GcACGGGg- -3'
miRNA:   3'- gugCCG-GCACUACUGCuCuUGCUCau -5'
16003 5' -53.5 NC_004065.1 + 176597 0.66 0.98329
Target:  5'- -uCGGUCGg---GGCGAGAACGAcGUGg -3'
miRNA:   3'- guGCCGGCacuaCUGCUCUUGCU-CAU- -5'
16003 5' -53.5 NC_004065.1 + 174397 0.66 0.98329
Target:  5'- uCAUGGUCG-GGUaGACGAGAaagaGCGGGa- -3'
miRNA:   3'- -GUGCCGGCaCUA-CUGCUCU----UGCUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.