miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1601 3' -56.8 NC_001347.2 + 40651 0.66 0.934124
Target:  5'- uGUGC--GGGaCGGUGUUGGgGCCGGGg -3'
miRNA:   3'- -CAUGguUCCgGUCACAGUCgCGGCUC- -5'
1601 3' -56.8 NC_001347.2 + 188604 0.66 0.934124
Target:  5'- -gACCAAGGCCAGcccgggaggGUCcgucgggacAGCGCgUGGGa -3'
miRNA:   3'- caUGGUUCCGGUCa--------CAG---------UCGCG-GCUC- -5'
1601 3' -56.8 NC_001347.2 + 193903 0.66 0.929143
Target:  5'- aUGCCGcuGGGCgAaauUGagGGCGCCGAGg -3'
miRNA:   3'- cAUGGU--UCCGgUc--ACagUCGCGGCUC- -5'
1601 3' -56.8 NC_001347.2 + 213960 0.66 0.912833
Target:  5'- cUACCAAGGCCAG-GU--GCGuguuguuuucCCGAGg -3'
miRNA:   3'- cAUGGUUCCGGUCaCAguCGC----------GGCUC- -5'
1601 3' -56.8 NC_001347.2 + 106293 0.67 0.900828
Target:  5'- -cGCCAAcGCCgAGcucUGUCGGCGCCGc- -3'
miRNA:   3'- caUGGUUcCGG-UC---ACAGUCGCGGCuc -5'
1601 3' -56.8 NC_001347.2 + 8309 0.67 0.890586
Target:  5'- -gGCUAGGGUCuGUGcggccaucgugcaguUCcaAGCGCCGAGg -3'
miRNA:   3'- caUGGUUCCGGuCAC---------------AG--UCGCGGCUC- -5'
1601 3' -56.8 NC_001347.2 + 40687 0.67 0.887938
Target:  5'- -cGCUggGGCCGGggcUGUUcGCGCCGc- -3'
miRNA:   3'- caUGGuuCCGGUC---ACAGuCGCGGCuc -5'
1601 3' -56.8 NC_001347.2 + 85308 0.67 0.887938
Target:  5'- -cGCCcGGGCUgccccgcagguGGUGaUCAGCGCCGc- -3'
miRNA:   3'- caUGGuUCCGG-----------UCAC-AGUCGCGGCuc -5'
1601 3' -56.8 NC_001347.2 + 100871 0.67 0.874188
Target:  5'- -aGCCGAGGCggcgCGGcG-CAGCGCCGGc -3'
miRNA:   3'- caUGGUUCCG----GUCaCaGUCGCGGCUc -5'
1601 3' -56.8 NC_001347.2 + 21622 0.67 0.874188
Target:  5'- uGUGCCAgccgucgccgcAGGCCuuUGUCGGCGCgGc- -3'
miRNA:   3'- -CAUGGU-----------UCCGGucACAGUCGCGgCuc -5'
1601 3' -56.8 NC_001347.2 + 166156 0.67 0.874188
Target:  5'- cGUGCCcgcGGGCCAGgucaUCGGCGCUa-- -3'
miRNA:   3'- -CAUGGu--UCCGGUCac--AGUCGCGGcuc -5'
1601 3' -56.8 NC_001347.2 + 82511 0.68 0.867001
Target:  5'- -gGCCGAGGCCAGcG-CAGCGUa--- -3'
miRNA:   3'- caUGGUUCCGGUCaCaGUCGCGgcuc -5'
1601 3' -56.8 NC_001347.2 + 35280 0.68 0.867001
Target:  5'- -cGCCcgguAGGUCAgcGUGUCugauaccgGGCGCCGGGa -3'
miRNA:   3'- caUGGu---UCCGGU--CACAG--------UCGCGGCUC- -5'
1601 3' -56.8 NC_001347.2 + 168098 0.68 0.859612
Target:  5'- cGUGuCCAguucGGuGUCGGUGUC-GCGCCGAa -3'
miRNA:   3'- -CAU-GGU----UC-CGGUCACAGuCGCGGCUc -5'
1601 3' -56.8 NC_001347.2 + 101248 0.68 0.859612
Target:  5'- gGUGCCGcguguGGCCAG---CGGCGCCGGu -3'
miRNA:   3'- -CAUGGUu----CCGGUCacaGUCGCGGCUc -5'
1601 3' -56.8 NC_001347.2 + 184399 0.69 0.82816
Target:  5'- cGUugCGGGGCUucuuggacucGUGaagCGGCGCCGGGu -3'
miRNA:   3'- -CAugGUUCCGGu---------CACa--GUCGCGGCUC- -5'
1601 3' -56.8 NC_001347.2 + 28248 0.69 0.793995
Target:  5'- cGUACU--GGCUGGaacGUCGGCGCCGAc -3'
miRNA:   3'- -CAUGGuuCCGGUCa--CAGUCGCGGCUc -5'
1601 3' -56.8 NC_001347.2 + 150659 0.74 0.541422
Target:  5'- cGUACCAGGGCgccaCGGUGUUugAGC-CCGAGg -3'
miRNA:   3'- -CAUGGUUCCG----GUCACAG--UCGcGGCUC- -5'
1601 3' -56.8 NC_001347.2 + 163605 1.07 0.004461
Target:  5'- uGUACCAAGGCCAGUGUCAGCGCCGAGc -3'
miRNA:   3'- -CAUGGUUCCGGUCACAGUCGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.