miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1601 5' -61.2 NC_001347.2 + 208696 0.66 0.821184
Target:  5'- gGCgCaGGUCGUGCacgucggccACCAGCGccguggUCUCGGu -3'
miRNA:   3'- -CGgGcCCAGCGCG---------UGGUCGC------AGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 208122 0.66 0.821184
Target:  5'- -gCCGcGUCGCuCGCCGGCG-CUCGu -3'
miRNA:   3'- cgGGCcCAGCGcGUGGUCGCaGAGCu -5'
1601 5' -61.2 NC_001347.2 + 173986 0.66 0.821184
Target:  5'- uGCCUGGGaaCGCGCGCaCGGCGcggUCcCGu -3'
miRNA:   3'- -CGGGCCCa-GCGCGUG-GUCGC---AGaGCu -5'
1601 5' -61.2 NC_001347.2 + 168547 0.66 0.813134
Target:  5'- --gCGGGUCGCGCGCCgucuguaccguGGCGUggCUUa- -3'
miRNA:   3'- cggGCCCAGCGCGUGG-----------UCGCA--GAGcu -5'
1601 5' -61.2 NC_001347.2 + 183877 0.66 0.812321
Target:  5'- aGCCCuGGGUCaacauuucgagcaGCagGCGCCGGUG-CUCGu -3'
miRNA:   3'- -CGGG-CCCAG-------------CG--CGUGGUCGCaGAGCu -5'
1601 5' -61.2 NC_001347.2 + 209052 0.66 0.799127
Target:  5'- cGCUCGcgguugcGGUCGCGCACCGGCugcagacagggCGAa -3'
miRNA:   3'- -CGGGC-------CCAGCGCGUGGUCGcaga-------GCU- -5'
1601 5' -61.2 NC_001347.2 + 39808 0.66 0.788158
Target:  5'- uCCCGGG-CGCGCACCcaucuaGGUGgacgCcCGAc -3'
miRNA:   3'- cGGGCCCaGCGCGUGG------UCGCa---GaGCU- -5'
1601 5' -61.2 NC_001347.2 + 126075 0.66 0.788158
Target:  5'- aCCUGGc-CGCGCGCCAGCccaucccccUCUCGGc -3'
miRNA:   3'- cGGGCCcaGCGCGUGGUCGc--------AGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 200688 0.66 0.77958
Target:  5'- cGCCCGcuGUUGCGCGCCuGgaGcCUCGGu -3'
miRNA:   3'- -CGGGCc-CAGCGCGUGGuCg-CaGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 86230 0.66 0.77958
Target:  5'- cGCUCGGccaCGCGCuCCAGgGcCUCGGc -3'
miRNA:   3'- -CGGGCCca-GCGCGuGGUCgCaGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 215172 0.67 0.770887
Target:  5'- -gCCGGacCGUGCAauUCAGCGUCUUGAc -3'
miRNA:   3'- cgGGCCcaGCGCGU--GGUCGCAGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 100903 0.67 0.770887
Target:  5'- cUCCGGGUCGCGCugCuuuccccgAGC-UC-CGAc -3'
miRNA:   3'- cGGGCCCAGCGCGugG--------UCGcAGaGCU- -5'
1601 5' -61.2 NC_001347.2 + 171923 0.67 0.762087
Target:  5'- uGCCgCGG--UGCGCGCUAGCGUCgauuugugcaagUCGGg -3'
miRNA:   3'- -CGG-GCCcaGCGCGUGGUCGCAG------------AGCU- -5'
1601 5' -61.2 NC_001347.2 + 124276 0.67 0.761201
Target:  5'- cGCCCucauaguGGG-CGUGCGCCAGUuuaGUCaaUCGGa -3'
miRNA:   3'- -CGGG-------CCCaGCGCGUGGUCG---CAG--AGCU- -5'
1601 5' -61.2 NC_001347.2 + 162115 0.67 0.744194
Target:  5'- uUCCGGGcCGCGUcgGCCugcugaucuagcAGCGUUUUGAa -3'
miRNA:   3'- cGGGCCCaGCGCG--UGG------------UCGCAGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 196978 0.67 0.744194
Target:  5'- cGCCCGagacGG-CGCGCGuCCAGCGccugCUCu- -3'
miRNA:   3'- -CGGGC----CCaGCGCGU-GGUCGCa---GAGcu -5'
1601 5' -61.2 NC_001347.2 + 189871 0.67 0.735116
Target:  5'- cGCgCCGGGUCGCcuguccggcaGCAgCCGGgcCGcCUCGAc -3'
miRNA:   3'- -CG-GGCCCAGCG----------CGU-GGUC--GCaGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 170761 0.67 0.725961
Target:  5'- aGCCCGGGcggcguguuuUUGCGCAUCgccguGGCGUUgacggccgcuaUCGAg -3'
miRNA:   3'- -CGGGCCC----------AGCGCGUGG-----UCGCAG-----------AGCU- -5'
1601 5' -61.2 NC_001347.2 + 38654 0.68 0.707447
Target:  5'- uGCCCGGcGUCuGCaGCGCCAcCGUCgugcCGGc -3'
miRNA:   3'- -CGGGCC-CAG-CG-CGUGGUcGCAGa---GCU- -5'
1601 5' -61.2 NC_001347.2 + 127580 0.68 0.698103
Target:  5'- uGCCCGuGGaCGCG-GCCGGCGcgccUUUCGAu -3'
miRNA:   3'- -CGGGC-CCaGCGCgUGGUCGC----AGAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.