miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1601 5' -61.2 NC_001347.2 + 163639 1.09 0.001658
Target:  5'- uGCCCGGGUCGCGCACCAGCGUCUCGAu -3'
miRNA:   3'- -CGGGCCCAGCGCGUGGUCGCAGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 96920 0.8 0.169229
Target:  5'- aGCCCGGGcCGC-CGCCAGCGUC-CGc -3'
miRNA:   3'- -CGGGCCCaGCGcGUGGUCGCAGaGCu -5'
1601 5' -61.2 NC_001347.2 + 99541 0.73 0.423328
Target:  5'- cGgCCGGGUCGCGCGgCAGUGacagCUUGu -3'
miRNA:   3'- -CgGGCCCAGCGCGUgGUCGCa---GAGCu -5'
1601 5' -61.2 NC_001347.2 + 198390 0.73 0.431601
Target:  5'- cGCgCGGGUCGCGCAaCAGCGgaUCGc -3'
miRNA:   3'- -CGgGCCCAGCGCGUgGUCGCagAGCu -5'
1601 5' -61.2 NC_001347.2 + 210006 0.72 0.474327
Target:  5'- -gCCGGGUCGCGgucCGCCGGUGUUggGAc -3'
miRNA:   3'- cgGGCCCAGCGC---GUGGUCGCAGagCU- -5'
1601 5' -61.2 NC_001347.2 + 153756 0.7 0.565381
Target:  5'- -aCCGGGUCGgguCGCGCCAGUGcgCcgUCGAc -3'
miRNA:   3'- cgGGCCCAGC---GCGUGGUCGCa-G--AGCU- -5'
1601 5' -61.2 NC_001347.2 + 124341 0.7 0.574784
Target:  5'- uCCCGGGUacCGCG-GCCGGCGUgaCGGu -3'
miRNA:   3'- cGGGCCCA--GCGCgUGGUCGCAgaGCU- -5'
1601 5' -61.2 NC_001347.2 + 76767 0.69 0.631752
Target:  5'- cGCacaCGcGGUaGCGUuCCAGCGUCUCGu -3'
miRNA:   3'- -CGg--GC-CCAgCGCGuGGUCGCAGAGCu -5'
1601 5' -61.2 NC_001347.2 + 38852 0.68 0.679279
Target:  5'- cGUCCGcGUCGCGCGCCgcuaggaucAGCGUgUUGu -3'
miRNA:   3'- -CGGGCcCAGCGCGUGG---------UCGCAgAGCu -5'
1601 5' -61.2 NC_001347.2 + 127580 0.68 0.698103
Target:  5'- uGCCCGuGGaCGCG-GCCGGCGcgccUUUCGAu -3'
miRNA:   3'- -CGGGC-CCaGCGCgUGGUCGC----AGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 38654 0.68 0.707447
Target:  5'- uGCCCGGcGUCuGCaGCGCCAcCGUCgugcCGGc -3'
miRNA:   3'- -CGGGCC-CAG-CG-CGUGGUcGCAGa---GCU- -5'
1601 5' -61.2 NC_001347.2 + 170761 0.67 0.725961
Target:  5'- aGCCCGGGcggcguguuuUUGCGCAUCgccguGGCGUUgacggccgcuaUCGAg -3'
miRNA:   3'- -CGGGCCC----------AGCGCGUGG-----UCGCAG-----------AGCU- -5'
1601 5' -61.2 NC_001347.2 + 189871 0.67 0.735116
Target:  5'- cGCgCCGGGUCGCcuguccggcaGCAgCCGGgcCGcCUCGAc -3'
miRNA:   3'- -CG-GGCCCAGCG----------CGU-GGUC--GCaGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 196978 0.67 0.744194
Target:  5'- cGCCCGagacGG-CGCGCGuCCAGCGccugCUCu- -3'
miRNA:   3'- -CGGGC----CCaGCGCGU-GGUCGCa---GAGcu -5'
1601 5' -61.2 NC_001347.2 + 162115 0.67 0.744194
Target:  5'- uUCCGGGcCGCGUcgGCCugcugaucuagcAGCGUUUUGAa -3'
miRNA:   3'- cGGGCCCaGCGCG--UGG------------UCGCAGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 124276 0.67 0.761201
Target:  5'- cGCCCucauaguGGG-CGUGCGCCAGUuuaGUCaaUCGGa -3'
miRNA:   3'- -CGGG-------CCCaGCGCGUGGUCG---CAG--AGCU- -5'
1601 5' -61.2 NC_001347.2 + 171923 0.67 0.762087
Target:  5'- uGCCgCGG--UGCGCGCUAGCGUCgauuugugcaagUCGGg -3'
miRNA:   3'- -CGG-GCCcaGCGCGUGGUCGCAG------------AGCU- -5'
1601 5' -61.2 NC_001347.2 + 100903 0.67 0.770887
Target:  5'- cUCCGGGUCGCGCugCuuuccccgAGC-UC-CGAc -3'
miRNA:   3'- cGGGCCCAGCGCGugG--------UCGcAGaGCU- -5'
1601 5' -61.2 NC_001347.2 + 215172 0.67 0.770887
Target:  5'- -gCCGGacCGUGCAauUCAGCGUCUUGAc -3'
miRNA:   3'- cgGGCCcaGCGCGU--GGUCGCAGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 200688 0.66 0.77958
Target:  5'- cGCCCGcuGUUGCGCGCCuGgaGcCUCGGu -3'
miRNA:   3'- -CGGGCc-CAGCGCGUGGuCg-CaGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.