miRNA display CGI


Results 21 - 29 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1601 5' -61.2 NC_001347.2 + 200688 0.66 0.77958
Target:  5'- cGCCCGcuGUUGCGCGCCuGgaGcCUCGGu -3'
miRNA:   3'- -CGGGCc-CAGCGCGUGGuCg-CaGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 39808 0.66 0.788158
Target:  5'- uCCCGGG-CGCGCACCcaucuaGGUGgacgCcCGAc -3'
miRNA:   3'- cGGGCCCaGCGCGUGG------UCGCa---GaGCU- -5'
1601 5' -61.2 NC_001347.2 + 126075 0.66 0.788158
Target:  5'- aCCUGGc-CGCGCGCCAGCccaucccccUCUCGGc -3'
miRNA:   3'- cGGGCCcaGCGCGUGGUCGc--------AGAGCU- -5'
1601 5' -61.2 NC_001347.2 + 209052 0.66 0.799127
Target:  5'- cGCUCGcgguugcGGUCGCGCACCGGCugcagacagggCGAa -3'
miRNA:   3'- -CGGGC-------CCAGCGCGUGGUCGcaga-------GCU- -5'
1601 5' -61.2 NC_001347.2 + 183877 0.66 0.812321
Target:  5'- aGCCCuGGGUCaacauuucgagcaGCagGCGCCGGUG-CUCGu -3'
miRNA:   3'- -CGGG-CCCAG-------------CG--CGUGGUCGCaGAGCu -5'
1601 5' -61.2 NC_001347.2 + 168547 0.66 0.813134
Target:  5'- --gCGGGUCGCGCGCCgucuguaccguGGCGUggCUUa- -3'
miRNA:   3'- cggGCCCAGCGCGUGG-----------UCGCA--GAGcu -5'
1601 5' -61.2 NC_001347.2 + 173986 0.66 0.821184
Target:  5'- uGCCUGGGaaCGCGCGCaCGGCGcggUCcCGu -3'
miRNA:   3'- -CGGGCCCa-GCGCGUG-GUCGC---AGaGCu -5'
1601 5' -61.2 NC_001347.2 + 208122 0.66 0.821184
Target:  5'- -gCCGcGUCGCuCGCCGGCG-CUCGu -3'
miRNA:   3'- cgGGCcCAGCGcGUGGUCGCaGAGCu -5'
1601 5' -61.2 NC_001347.2 + 208696 0.66 0.821184
Target:  5'- gGCgCaGGUCGUGCacgucggccACCAGCGccguggUCUCGGu -3'
miRNA:   3'- -CGgGcCCAGCGCG---------UGGUCGC------AGAGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.