Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1601 | 5' | -61.2 | NC_001347.2 | + | 200688 | 0.66 | 0.77958 |
Target: 5'- cGCCCGcuGUUGCGCGCCuGgaGcCUCGGu -3' miRNA: 3'- -CGGGCc-CAGCGCGUGGuCg-CaGAGCU- -5' |
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1601 | 5' | -61.2 | NC_001347.2 | + | 39808 | 0.66 | 0.788158 |
Target: 5'- uCCCGGG-CGCGCACCcaucuaGGUGgacgCcCGAc -3' miRNA: 3'- cGGGCCCaGCGCGUGG------UCGCa---GaGCU- -5' |
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1601 | 5' | -61.2 | NC_001347.2 | + | 126075 | 0.66 | 0.788158 |
Target: 5'- aCCUGGc-CGCGCGCCAGCccaucccccUCUCGGc -3' miRNA: 3'- cGGGCCcaGCGCGUGGUCGc--------AGAGCU- -5' |
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1601 | 5' | -61.2 | NC_001347.2 | + | 209052 | 0.66 | 0.799127 |
Target: 5'- cGCUCGcgguugcGGUCGCGCACCGGCugcagacagggCGAa -3' miRNA: 3'- -CGGGC-------CCAGCGCGUGGUCGcaga-------GCU- -5' |
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1601 | 5' | -61.2 | NC_001347.2 | + | 183877 | 0.66 | 0.812321 |
Target: 5'- aGCCCuGGGUCaacauuucgagcaGCagGCGCCGGUG-CUCGu -3' miRNA: 3'- -CGGG-CCCAG-------------CG--CGUGGUCGCaGAGCu -5' |
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1601 | 5' | -61.2 | NC_001347.2 | + | 168547 | 0.66 | 0.813134 |
Target: 5'- --gCGGGUCGCGCGCCgucuguaccguGGCGUggCUUa- -3' miRNA: 3'- cggGCCCAGCGCGUGG-----------UCGCA--GAGcu -5' |
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1601 | 5' | -61.2 | NC_001347.2 | + | 173986 | 0.66 | 0.821184 |
Target: 5'- uGCCUGGGaaCGCGCGCaCGGCGcggUCcCGu -3' miRNA: 3'- -CGGGCCCa-GCGCGUG-GUCGC---AGaGCu -5' |
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1601 | 5' | -61.2 | NC_001347.2 | + | 208122 | 0.66 | 0.821184 |
Target: 5'- -gCCGcGUCGCuCGCCGGCG-CUCGu -3' miRNA: 3'- cgGGCcCAGCGcGUGGUCGCaGAGCu -5' |
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1601 | 5' | -61.2 | NC_001347.2 | + | 208696 | 0.66 | 0.821184 |
Target: 5'- gGCgCaGGUCGUGCacgucggccACCAGCGccguggUCUCGGu -3' miRNA: 3'- -CGgGcCCAGCGCG---------UGGUCGC------AGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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