Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1601 | 5' | -61.2 | NC_001347.2 | + | 189871 | 0.67 | 0.735116 |
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Target: 5'- cGCgCCGGGUCGCcuguccggcaGCAgCCGGgcCGcCUCGAc -3' miRNA: 3'- -CG-GGCCCAGCG----------CGU-GGUC--GCaGAGCU- -5' |
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| 1601 | 5' | -61.2 | NC_001347.2 | + | 196978 | 0.67 | 0.744194 |
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Target: 5'- cGCCCGagacGG-CGCGCGuCCAGCGccugCUCu- -3' miRNA: 3'- -CGGGC----CCaGCGCGU-GGUCGCa---GAGcu -5' |
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| 1601 | 5' | -61.2 | NC_001347.2 | + | 198390 | 0.73 | 0.431601 |
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Target: 5'- cGCgCGGGUCGCGCAaCAGCGgaUCGc -3' miRNA: 3'- -CGgGCCCAGCGCGUgGUCGCagAGCu -5' |
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| 1601 | 5' | -61.2 | NC_001347.2 | + | 200688 | 0.66 | 0.77958 |
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Target: 5'- cGCCCGcuGUUGCGCGCCuGgaGcCUCGGu -3' miRNA: 3'- -CGGGCc-CAGCGCGUGGuCg-CaGAGCU- -5' |
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| 1601 | 5' | -61.2 | NC_001347.2 | + | 208122 | 0.66 | 0.821184 |
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Target: 5'- -gCCGcGUCGCuCGCCGGCG-CUCGu -3' miRNA: 3'- cgGGCcCAGCGcGUGGUCGCaGAGCu -5' |
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| 1601 | 5' | -61.2 | NC_001347.2 | + | 208696 | 0.66 | 0.821184 |
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Target: 5'- gGCgCaGGUCGUGCacgucggccACCAGCGccguggUCUCGGu -3' miRNA: 3'- -CGgGcCCAGCGCG---------UGGUCGC------AGAGCU- -5' |
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| 1601 | 5' | -61.2 | NC_001347.2 | + | 209052 | 0.66 | 0.799127 |
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Target: 5'- cGCUCGcgguugcGGUCGCGCACCGGCugcagacagggCGAa -3' miRNA: 3'- -CGGGC-------CCAGCGCGUGGUCGcaga-------GCU- -5' |
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| 1601 | 5' | -61.2 | NC_001347.2 | + | 210006 | 0.72 | 0.474327 |
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Target: 5'- -gCCGGGUCGCGgucCGCCGGUGUUggGAc -3' miRNA: 3'- cgGGCCCAGCGC---GUGGUCGCAGagCU- -5' |
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| 1601 | 5' | -61.2 | NC_001347.2 | + | 215172 | 0.67 | 0.770887 |
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Target: 5'- -gCCGGacCGUGCAauUCAGCGUCUUGAc -3' miRNA: 3'- cgGGCCcaGCGCGU--GGUCGCAGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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