Results 1 - 20 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 120563 | 0.66 | 0.999758 |
Target: 5'- -gGUCGg-CGCGAGCGGGcgGGACc- -3' miRNA: 3'- agCAGCgaGUGCUUGCUCuuUCUGcu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 64548 | 0.66 | 0.999758 |
Target: 5'- uUCGUC-CUgGCGAACGAGuaucuGAGccgccGCGGg -3' miRNA: 3'- -AGCAGcGAgUGCUUGCUCu----UUC-----UGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 15382 | 0.66 | 0.999758 |
Target: 5'- aCGUCGCcaUCACGGACGAau---GCGGu -3' miRNA: 3'- aGCAGCG--AGUGCUUGCUcuuucUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 99266 | 0.66 | 0.999758 |
Target: 5'- cUCGUCgguguacuGCUCGCGGucgcccACGAcGAGGGGCa- -3' miRNA: 3'- -AGCAG--------CGAGUGCU------UGCU-CUUUCUGcu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 57042 | 0.66 | 0.999758 |
Target: 5'- cUCGUCGUcggCACGA-CGGGcAAGGCc- -3' miRNA: 3'- -AGCAGCGa--GUGCUuGCUCuUUCUGcu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 129963 | 0.66 | 0.999696 |
Target: 5'- -aGgCGCUCacGCGAGCGAGGGucAGGCu- -3' miRNA: 3'- agCaGCGAG--UGCUUGCUCUU--UCUGcu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 133642 | 0.66 | 0.999696 |
Target: 5'- --uUCGCcgagC-CGAuCGAGGAAGACGAc -3' miRNA: 3'- agcAGCGa---GuGCUuGCUCUUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 83189 | 0.66 | 0.999696 |
Target: 5'- aCGUCGCUgagCACGAA-GGGAAAuuCGGg -3' miRNA: 3'- aGCAGCGA---GUGCUUgCUCUUUcuGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 218218 | 0.66 | 0.999696 |
Target: 5'- aUCGauaUCGau-GCGAGCGAGAAuguGACGGu -3' miRNA: 3'- -AGC---AGCgagUGCUUGCUCUUu--CUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 61634 | 0.66 | 0.999696 |
Target: 5'- -gGUCGgUCugG-AUGAGAcgguuggcgcugGAGACGAu -3' miRNA: 3'- agCAGCgAGugCuUGCUCU------------UUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 188341 | 0.66 | 0.999696 |
Target: 5'- gCGUCcCUCGCGAugcucagccccaGCGAGggGG-CGc -3' miRNA: 3'- aGCAGcGAGUGCU------------UGCUCuuUCuGCu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 146042 | 0.66 | 0.999696 |
Target: 5'- cCGaaggCGC-CACGAcCGAGGAugccgaGGACGAg -3' miRNA: 3'- aGCa---GCGaGUGCUuGCUCUU------UCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 52853 | 0.66 | 0.999696 |
Target: 5'- aCGaUC-CUguCG-ACGAGAAAGGCGAa -3' miRNA: 3'- aGC-AGcGAguGCuUGCUCUUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 200780 | 0.66 | 0.999696 |
Target: 5'- cUCGUCGCgcgGCGGugGcGGgcGACGGc -3' miRNA: 3'- -AGCAGCGag-UGCUugCuCUuuCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 130748 | 0.66 | 0.999696 |
Target: 5'- cUCGUCGUggGCGAccGCGAGcaguacaccGACGAg -3' miRNA: 3'- -AGCAGCGagUGCU--UGCUCuuu------CUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 166274 | 0.66 | 0.999696 |
Target: 5'- -gGUCGCUgacugaaaaCACG-GCGGGGAAG-CGAu -3' miRNA: 3'- agCAGCGA---------GUGCuUGCUCUUUCuGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 78613 | 0.66 | 0.999628 |
Target: 5'- gUCGUCGCgccgccugaggugaaCGCGGucgGCGAGGgcGACGu -3' miRNA: 3'- -AGCAGCGa--------------GUGCU---UGCUCUuuCUGCu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 221821 | 0.66 | 0.99962 |
Target: 5'- aUCGUCGUUUAUcagaAGCGAGGuuGGGGCGu -3' miRNA: 3'- -AGCAGCGAGUGc---UUGCUCU--UUCUGCu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 80312 | 0.66 | 0.99962 |
Target: 5'- gCGgUGCg-GCGAACGAGAucGACGc -3' miRNA: 3'- aGCaGCGagUGCUUGCUCUuuCUGCu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 113942 | 0.66 | 0.99962 |
Target: 5'- gCGgCGCUCGgGGGCuGGGAcgGAGACGc -3' miRNA: 3'- aGCaGCGAGUgCUUG-CUCU--UUCUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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