miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 80312 0.66 0.99962
Target:  5'- gCGgUGCg-GCGAACGAGAucGACGc -3'
miRNA:   3'- aGCaGCGagUGCUUGCUCUuuCUGCu -5'
16013 3' -49.9 NC_004065.1 + 130748 0.66 0.999696
Target:  5'- cUCGUCGUggGCGAccGCGAGcaguacaccGACGAg -3'
miRNA:   3'- -AGCAGCGagUGCU--UGCUCuuu------CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 129963 0.66 0.999696
Target:  5'- -aGgCGCUCacGCGAGCGAGGGucAGGCu- -3'
miRNA:   3'- agCaGCGAG--UGCUUGCUCUU--UCUGcu -5'
16013 3' -49.9 NC_004065.1 + 57713 0.66 0.99962
Target:  5'- uUCGuUCGUUCgugcgauucaccGCGGGCGAGAgGAGGgGAg -3'
miRNA:   3'- -AGC-AGCGAG------------UGCUUGCUCU-UUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 52853 0.66 0.999696
Target:  5'- aCGaUC-CUguCG-ACGAGAAAGGCGAa -3'
miRNA:   3'- aGC-AGcGAguGCuUGCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 200780 0.66 0.999696
Target:  5'- cUCGUCGCgcgGCGGugGcGGgcGACGGc -3'
miRNA:   3'- -AGCAGCGag-UGCUugCuCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 26357 0.66 0.99962
Target:  5'- aUCGgCGCUgGCGAcggcgGCGGGGAuacgGGGCGu -3'
miRNA:   3'- -AGCaGCGAgUGCU-----UGCUCUU----UCUGCu -5'
16013 3' -49.9 NC_004065.1 + 197214 0.66 0.99962
Target:  5'- -aGUCGCggaaCGCGAGCaucacgcgGAGAAAcGAUGAg -3'
miRNA:   3'- agCAGCGa---GUGCUUG--------CUCUUU-CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 221821 0.66 0.99962
Target:  5'- aUCGUCGUUUAUcagaAGCGAGGuuGGGGCGu -3'
miRNA:   3'- -AGCAGCGAGUGc---UUGCUCU--UUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 62959 0.66 0.999528
Target:  5'- ----gGCUCGCGAGCGAGcu-GAcCGAa -3'
miRNA:   3'- agcagCGAGUGCUUGCUCuuuCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 99266 0.66 0.999758
Target:  5'- cUCGUCgguguacuGCUCGCGGucgcccACGAcGAGGGGCa- -3'
miRNA:   3'- -AGCAG--------CGAGUGCU------UGCU-CUUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 1060 0.66 0.999418
Target:  5'- -gGUCGCUCGaucUGAGCGucucGAGAUGAg -3'
miRNA:   3'- agCAGCGAGU---GCUUGCucu-UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 113942 0.66 0.99962
Target:  5'- gCGgCGCUCGgGGGCuGGGAcgGAGACGc -3'
miRNA:   3'- aGCaGCGAGUgCUUG-CUCU--UUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 118594 0.66 0.999418
Target:  5'- aUCGUCGgggcccugcauCUCACaGACGGGGAGGAaucCGGc -3'
miRNA:   3'- -AGCAGC-----------GAGUGcUUGCUCUUUCU---GCU- -5'
16013 3' -49.9 NC_004065.1 + 211758 0.66 0.999418
Target:  5'- aUCGgCGCUacucCGAGCGAcgccuccagucGGGAGACGAc -3'
miRNA:   3'- -AGCaGCGAgu--GCUUGCU-----------CUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 57042 0.66 0.999758
Target:  5'- cUCGUCGUcggCACGA-CGGGcAAGGCc- -3'
miRNA:   3'- -AGCAGCGa--GUGCUuGCUCuUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 120563 0.66 0.999758
Target:  5'- -gGUCGg-CGCGAGCGGGcgGGACc- -3'
miRNA:   3'- agCAGCgaGUGCUUGCUCuuUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 146042 0.66 0.999696
Target:  5'- cCGaaggCGC-CACGAcCGAGGAugccgaGGACGAg -3'
miRNA:   3'- aGCa---GCGaGUGCUuGCUCUU------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 117458 0.66 0.999528
Target:  5'- aCGcCGCcCAUGGACaAGAAGGAgGAa -3'
miRNA:   3'- aGCaGCGaGUGCUUGcUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 166274 0.66 0.999696
Target:  5'- -gGUCGCUgacugaaaaCACG-GCGGGGAAG-CGAu -3'
miRNA:   3'- agCAGCGA---------GUGCuUGCUCUUUCuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.