miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 221821 0.66 0.99962
Target:  5'- aUCGUCGUUUAUcagaAGCGAGGuuGGGGCGu -3'
miRNA:   3'- -AGCAGCGAGUGc---UUGCUCU--UUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 107501 0.66 0.99962
Target:  5'- cUGUCGCUCGaccgcuCGcACGAGGAGGuGCGc -3'
miRNA:   3'- aGCAGCGAGU------GCuUGCUCUUUC-UGCu -5'
16013 3' -49.9 NC_004065.1 + 117458 0.66 0.999528
Target:  5'- aCGcCGCcCAUGGACaAGAAGGAgGAa -3'
miRNA:   3'- aGCaGCGaGUGCUUGcUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 130717 0.66 0.999528
Target:  5'- gCGUCGa--GCGAuuACGAGGAgggaGGGCGGu -3'
miRNA:   3'- aGCAGCgagUGCU--UGCUCUU----UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 78613 0.66 0.999628
Target:  5'- gUCGUCGCgccgccugaggugaaCGCGGucgGCGAGGgcGACGu -3'
miRNA:   3'- -AGCAGCGa--------------GUGCU---UGCUCUuuCUGCu -5'
16013 3' -49.9 NC_004065.1 + 188341 0.66 0.999696
Target:  5'- gCGUCcCUCGCGAugcucagccccaGCGAGggGG-CGc -3'
miRNA:   3'- aGCAGcGAGUGCU------------UGCUCuuUCuGCu -5'
16013 3' -49.9 NC_004065.1 + 26357 0.66 0.99962
Target:  5'- aUCGgCGCUgGCGAcggcgGCGGGGAuacgGGGCGu -3'
miRNA:   3'- -AGCaGCGAgUGCU-----UGCUCUU----UCUGCu -5'
16013 3' -49.9 NC_004065.1 + 57713 0.66 0.99962
Target:  5'- uUCGuUCGUUCgugcgauucaccGCGGGCGAGAgGAGGgGAg -3'
miRNA:   3'- -AGC-AGCGAG------------UGCUUGCUCU-UUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 113942 0.66 0.99962
Target:  5'- gCGgCGCUCGgGGGCuGGGAcgGAGACGc -3'
miRNA:   3'- aGCaGCGAGUgCUUG-CUCU--UUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 133642 0.66 0.999696
Target:  5'- --uUCGCcgagC-CGAuCGAGGAAGACGAc -3'
miRNA:   3'- agcAGCGa---GuGCUuGCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 62959 0.66 0.999528
Target:  5'- ----gGCUCGCGAGCGAGcu-GAcCGAa -3'
miRNA:   3'- agcagCGAGUGCUUGCUCuuuCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 1060 0.66 0.999418
Target:  5'- -gGUCGCUCGaucUGAGCGucucGAGAUGAg -3'
miRNA:   3'- agCAGCGAGU---GCUUGCucu-UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 184733 0.66 0.99962
Target:  5'- cUGUCGau--CGGAgGAGGAAGAUGAu -3'
miRNA:   3'- aGCAGCgaguGCUUgCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 164214 0.67 0.998942
Target:  5'- aUCG-CGUUCACGAucgccucgauccGCGGGAu-GAUGAu -3'
miRNA:   3'- -AGCaGCGAGUGCU------------UGCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 186738 0.67 0.999285
Target:  5'- gUCGUCGUcuggUCGCGGGuCGAcGAcGACGAc -3'
miRNA:   3'- -AGCAGCG----AGUGCUU-GCUcUUuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 56391 0.67 0.998722
Target:  5'- gUCGgaggCGCUC-CGAucaGCGAGu--GGCGAu -3'
miRNA:   3'- -AGCa---GCGAGuGCU---UGCUCuuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 36169 0.67 0.998942
Target:  5'- -aGUCGC-CGCGGACGAagc-GACGGc -3'
miRNA:   3'- agCAGCGaGUGCUUGCUcuuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 28283 0.67 0.999001
Target:  5'- gCGUgcugUGCUCcgaggugGCGAACGAGAucacgucgccccgugAAGACGGa -3'
miRNA:   3'- aGCA----GCGAG-------UGCUUGCUCU---------------UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 58227 0.67 0.999128
Target:  5'- aCGUCGCcgcgCACGAAgggcuccucgcUGAGGAAGuucuCGAu -3'
miRNA:   3'- aGCAGCGa---GUGCUU-----------GCUCUUUCu---GCU- -5'
16013 3' -49.9 NC_004065.1 + 112300 0.67 0.999128
Target:  5'- aCGgugCGCgCGCGAgagacGCGAGGGuGACGGg -3'
miRNA:   3'- aGCa--GCGaGUGCU-----UGCUCUUuCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.