Results 41 - 60 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 58227 | 0.67 | 0.999128 |
Target: 5'- aCGUCGCcgcgCACGAAgggcuccucgcUGAGGAAGuucuCGAu -3' miRNA: 3'- aGCAGCGa---GUGCUU-----------GCUCUUUCu---GCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 194353 | 0.67 | 0.998722 |
Target: 5'- cUCcUgGCUCGCGAGCGAcgu-GGCGAu -3' miRNA: 3'- -AGcAgCGAGUGCUUGCUcuuuCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 28283 | 0.67 | 0.999001 |
Target: 5'- gCGUgcugUGCUCcgaggugGCGAACGAGAucacgucgccccgugAAGACGGa -3' miRNA: 3'- aGCA----GCGAG-------UGCUUGCUCU---------------UUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 56391 | 0.67 | 0.998722 |
Target: 5'- gUCGgaggCGCUC-CGAucaGCGAGu--GGCGAu -3' miRNA: 3'- -AGCa---GCGAGuGCU---UGCUCuuuCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 143889 | 0.67 | 0.998722 |
Target: 5'- cUCGUCagGUgCGCGGACGGGAcGGugGu -3' miRNA: 3'- -AGCAG--CGaGUGCUUGCUCUuUCugCu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 82428 | 0.67 | 0.998722 |
Target: 5'- gUGUUGgUCugGuccuGCGAG-AGGACGAu -3' miRNA: 3'- aGCAGCgAGugCu---UGCUCuUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 153661 | 0.67 | 0.998722 |
Target: 5'- gCGgCGCcggCGCGAugGAGAucGACa- -3' miRNA: 3'- aGCaGCGa--GUGCUugCUCUuuCUGcu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 164214 | 0.67 | 0.998942 |
Target: 5'- aUCG-CGUUCACGAucgccucgauccGCGGGAu-GAUGAu -3' miRNA: 3'- -AGCaGCGAGUGCU------------UGCUCUuuCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 186738 | 0.67 | 0.999285 |
Target: 5'- gUCGUCGUcuggUCGCGGGuCGAcGAcGACGAc -3' miRNA: 3'- -AGCAGCG----AGUGCUU-GCUcUUuCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 143020 | 0.67 | 0.998722 |
Target: 5'- -aGUCGCuaUCACu-ACGGGGAAGACc- -3' miRNA: 3'- agCAGCG--AGUGcuUGCUCUUUCUGcu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 133394 | 0.67 | 0.998466 |
Target: 5'- ----aGCUCGCGAccgccgGCGAcGAGGACGAa -3' miRNA: 3'- agcagCGAGUGCU------UGCUcUUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 118762 | 0.67 | 0.998722 |
Target: 5'- cUC-UCGgUCACGGcgccgACGAGGcaGAGGCGAu -3' miRNA: 3'- -AGcAGCgAGUGCU-----UGCUCU--UUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 188654 | 0.67 | 0.998722 |
Target: 5'- aUGUcCGCUCgaggGCGcGCGGcGGGAGACGAc -3' miRNA: 3'- aGCA-GCGAG----UGCuUGCU-CUUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 6600 | 0.67 | 0.999285 |
Target: 5'- -gGUCGC-CACacACGuGGGAAGGCGAu -3' miRNA: 3'- agCAGCGaGUGcuUGC-UCUUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 119847 | 0.67 | 0.998942 |
Target: 5'- gCGUCGCggccgcCGCaGAGguCGGGGAAGACGu -3' miRNA: 3'- aGCAGCGa-----GUG-CUU--GCUCUUUCUGCu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 111710 | 0.67 | 0.999128 |
Target: 5'- gCGguccCGCUgGCG-ACGAGAAcgccgaugaGGACGAu -3' miRNA: 3'- aGCa---GCGAgUGCuUGCUCUU---------UCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 22492 | 0.68 | 0.996437 |
Target: 5'- aCGaCGCggagCGCGcGGCGAGGAGGAcCGAc -3' miRNA: 3'- aGCaGCGa---GUGC-UUGCUCUUUCU-GCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 37423 | 0.68 | 0.996437 |
Target: 5'- aCGgcgCGUUCACGcuggagcGCGuGGAAGACGGa -3' miRNA: 3'- aGCa--GCGAGUGCu------UGCuCUUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 199422 | 0.68 | 0.998167 |
Target: 5'- gCGUCGCUgccucggaaCGCGGACGAGGcgcucgccgcGGCGGa -3' miRNA: 3'- aGCAGCGA---------GUGCUUGCUCUuu--------CUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 189564 | 0.68 | 0.99782 |
Target: 5'- -aGUCcgaGCUCGaGAGCGAGGGAGAUa- -3' miRNA: 3'- agCAG---CGAGUgCUUGCUCUUUCUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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