Results 21 - 40 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 149576 | 0.73 | 0.939755 |
Target: 5'- cUCGUCGggUACGAacuGCGAGAAgaagcuguugcAGACGAc -3' miRNA: 3'- -AGCAGCgaGUGCU---UGCUCUU-----------UCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 157120 | 0.73 | 0.956739 |
Target: 5'- gCG-CGaCUCGCGAACGAGGucGAGuCGAg -3' miRNA: 3'- aGCaGC-GAGUGCUUGCUCU--UUCuGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 164605 | 0.72 | 0.972945 |
Target: 5'- cCGcCGCUCGCaGGCGGGGAAGAgGc -3' miRNA: 3'- aGCaGCGAGUGcUUGCUCUUUCUgCu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 190793 | 0.72 | 0.963863 |
Target: 5'- gUCGUCGuCUCACuGAACaAGAucGAUGAu -3' miRNA: 3'- -AGCAGC-GAGUG-CUUGcUCUuuCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 184919 | 0.72 | 0.963863 |
Target: 5'- -gGUgGCUCGgGAGCGGccGGGAGACGGu -3' miRNA: 3'- agCAgCGAGUgCUUGCU--CUUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 176886 | 0.72 | 0.960411 |
Target: 5'- gUCGagGCUCugGGAaGGGAGAGACu- -3' miRNA: 3'- -AGCagCGAGugCUUgCUCUUUCUGcu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 132493 | 0.72 | 0.967099 |
Target: 5'- cUGUCGCUCGuCGuguuggucGACGAGAugAAGAUGAu -3' miRNA: 3'- aGCAGCGAGU-GC--------UUGCUCU--UUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 17626 | 0.72 | 0.960411 |
Target: 5'- -gGUCGCggCGCGucuuGCGAGGAAGAuCGGc -3' miRNA: 3'- agCAGCGa-GUGCu---UGCUCUUUCU-GCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 171990 | 0.72 | 0.959333 |
Target: 5'- aUCGUCGCgaggaUCACGcACGAGAGGaagaucauuccgauGGCGAg -3' miRNA: 3'- -AGCAGCG-----AGUGCuUGCUCUUU--------------CUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 66574 | 0.71 | 0.982321 |
Target: 5'- cUCGUCGCUgGCGAGCGccugccgcacGAuGGACGc -3' miRNA: 3'- -AGCAGCGAgUGCUUGCu---------CUuUCUGCu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 217978 | 0.71 | 0.980248 |
Target: 5'- aUCGcCGCUCgcagACGAACGAGcaAAAGcCGAu -3' miRNA: 3'- -AGCaGCGAG----UGCUUGCUC--UUUCuGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 194704 | 0.71 | 0.975568 |
Target: 5'- gUGUCGUcCAUccGCGAGAAGGGCGGc -3' miRNA: 3'- aGCAGCGaGUGcuUGCUCUUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 135550 | 0.71 | 0.982321 |
Target: 5'- aCGUCGgaCggGCGGACGAcgGGGAGGCGGc -3' miRNA: 3'- aGCAGCgaG--UGCUUGCU--CUUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 75173 | 0.71 | 0.984226 |
Target: 5'- gUGUCGCgUCAUGAccucuuucuGCGAGAucucgcGGACGAu -3' miRNA: 3'- aGCAGCG-AGUGCU---------UGCUCUu-----UCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 180458 | 0.71 | 0.978 |
Target: 5'- cUCGUCGCgaugCACGGcuACGuGGccGGCGAu -3' miRNA: 3'- -AGCAGCGa---GUGCU--UGCuCUuuCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 164866 | 0.71 | 0.982321 |
Target: 5'- uUUGaCGCUgACGAgccGCGAGcgGGACGAu -3' miRNA: 3'- -AGCaGCGAgUGCU---UGCUCuuUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 198782 | 0.71 | 0.978 |
Target: 5'- aCGaUCGgaCACGGucGCGAGGAAGAgGAc -3' miRNA: 3'- aGC-AGCgaGUGCU--UGCUCUUUCUgCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 98740 | 0.71 | 0.978 |
Target: 5'- cCGUCGCUCACcaacccccgGAGgGAGAAGGcGCGc -3' miRNA: 3'- aGCAGCGAGUG---------CUUgCUCUUUC-UGCu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 130681 | 0.71 | 0.982321 |
Target: 5'- ---aCGCUCGuCGGGCGAG-GAGGCGGa -3' miRNA: 3'- agcaGCGAGU-GCUUGCUCuUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 59448 | 0.71 | 0.975568 |
Target: 5'- gUCGUCGUgauccgCGCGAACGAGAccacguucgccAGGAUa- -3' miRNA: 3'- -AGCAGCGa-----GUGCUUGCUCU-----------UUCUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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