miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 61981 1.1 0.017015
Target:  5'- gUCGUCGCUCACGAACGAGAAAGACGAc -3'
miRNA:   3'- -AGCAGCGAGUGCUUGCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 227853 0.8 0.653414
Target:  5'- aUCGUCGUcugggggagaUCACGGACGGGgGGAGACGGc -3'
miRNA:   3'- -AGCAGCG----------AGUGCUUGCUC-UUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 188399 0.78 0.752448
Target:  5'- -aGUCGCUCucguccuGCGGGCGAGA-GGGCGAg -3'
miRNA:   3'- agCAGCGAG-------UGCUUGCUCUuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 118121 0.77 0.826148
Target:  5'- cUCGUCGCcgCGCGGACGAGGuu-GCGGu -3'
miRNA:   3'- -AGCAGCGa-GUGCUUGCUCUuucUGCU- -5'
16013 3' -49.9 NC_004065.1 + 97749 0.76 0.850738
Target:  5'- cCGgcUCGUUCAUGGACGAGAucauGGGCGGc -3'
miRNA:   3'- aGC--AGCGAGUGCUUGCUCUu---UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 35677 0.76 0.873542
Target:  5'- aCGUCGCUCGCGAGCcagGAGAucGcgcgucGCGAc -3'
miRNA:   3'- aGCAGCGAGUGCUUG---CUCUuuC------UGCU- -5'
16013 3' -49.9 NC_004065.1 + 33202 0.75 0.880718
Target:  5'- aCGUCGUacaugaggUCGCGGGCGAGGuguccgcAGACGAg -3'
miRNA:   3'- aGCAGCG--------AGUGCUUGCUCUu------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 31274 0.75 0.887672
Target:  5'- -gGUCGC-CACGGACggaGAGGAGGACGu -3'
miRNA:   3'- agCAGCGaGUGCUUG---CUCUUUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 133605 0.75 0.887672
Target:  5'- gCGUUGCgagCGCGAuuuCGAGgcGGACGAc -3'
miRNA:   3'- aGCAGCGa--GUGCUu--GCUCuuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 174390 0.75 0.907162
Target:  5'- gUGUCGUUCAUGGucggguagACGAGAAAGAgCGGg -3'
miRNA:   3'- aGCAGCGAGUGCU--------UGCUCUUUCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 74897 0.74 0.913192
Target:  5'- cUCGUa-CUCGCGGGCgcgGAGGAAGGCGAc -3'
miRNA:   3'- -AGCAgcGAGUGCUUG---CUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 226793 0.74 0.918983
Target:  5'- cCGUCGCUCugGAacaACGAauGAGACa- -3'
miRNA:   3'- aGCAGCGAGugCU---UGCUcuUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 33049 0.74 0.929848
Target:  5'- aCGUCGCggacgcaGCGGAUGAGAAAGAgcaUGAa -3'
miRNA:   3'- aGCAGCGag-----UGCUUGCUCUUUCU---GCU- -5'
16013 3' -49.9 NC_004065.1 + 70038 0.74 0.929848
Target:  5'- gCGUCGCucgUCACGGugGAGAcGGccACGAu -3'
miRNA:   3'- aGCAGCG---AGUGCUugCUCUuUC--UGCU- -5'
16013 3' -49.9 NC_004065.1 + 220462 0.74 0.929848
Target:  5'- aUCGUCGaa-ACGGAucuCGGGAGAGACGGc -3'
miRNA:   3'- -AGCAGCgagUGCUU---GCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 149576 0.73 0.939755
Target:  5'- cUCGUCGggUACGAacuGCGAGAAgaagcuguugcAGACGAc -3'
miRNA:   3'- -AGCAGCgaGUGCU---UGCUCUU-----------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 151464 0.73 0.948712
Target:  5'- cUGUCGCUC-CGGA-GAGGGAGAgGAg -3'
miRNA:   3'- aGCAGCGAGuGCUUgCUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 165233 0.73 0.948712
Target:  5'- ---aCGCUCACGGAUGGGGucAGGAUGGg -3'
miRNA:   3'- agcaGCGAGUGCUUGCUCU--UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 175583 0.73 0.95284
Target:  5'- gCG-CGCgaacaGCGAGCGAGAggcuGAGGCGAa -3'
miRNA:   3'- aGCaGCGag---UGCUUGCUCU----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 118003 0.73 0.955593
Target:  5'- gUCGUCGUccUCGuCGGGCGAGAAacucuuguugucguAGGCGGc -3'
miRNA:   3'- -AGCAGCG--AGU-GCUUGCUCUU--------------UCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.