miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 68102 0.73 0.956739
Target:  5'- -aGUCGCU-ACGGACGGuGAcucGAGACGAg -3'
miRNA:   3'- agCAGCGAgUGCUUGCU-CU---UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 157120 0.73 0.956739
Target:  5'- gCG-CGaCUCGCGAACGAGGucGAGuCGAg -3'
miRNA:   3'- aGCaGC-GAGUGCUUGCUCU--UUCuGCU- -5'
16013 3' -49.9 NC_004065.1 + 171990 0.72 0.959333
Target:  5'- aUCGUCGCgaggaUCACGcACGAGAGGaagaucauuccgauGGCGAg -3'
miRNA:   3'- -AGCAGCG-----AGUGCuUGCUCUUU--------------CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 176886 0.72 0.960411
Target:  5'- gUCGagGCUCugGGAaGGGAGAGACu- -3'
miRNA:   3'- -AGCagCGAGugCUUgCUCUUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 17626 0.72 0.960411
Target:  5'- -gGUCGCggCGCGucuuGCGAGGAAGAuCGGc -3'
miRNA:   3'- agCAGCGa-GUGCu---UGCUCUUUCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 184919 0.72 0.963863
Target:  5'- -gGUgGCUCGgGAGCGGccGGGAGACGGu -3'
miRNA:   3'- agCAgCGAGUgCUUGCU--CUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 190793 0.72 0.963863
Target:  5'- gUCGUCGuCUCACuGAACaAGAucGAUGAu -3'
miRNA:   3'- -AGCAGC-GAGUG-CUUGcUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 132493 0.72 0.967099
Target:  5'- cUGUCGCUCGuCGuguuggucGACGAGAugAAGAUGAu -3'
miRNA:   3'- aGCAGCGAGU-GC--------UUGCUCU--UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 164605 0.72 0.972945
Target:  5'- cCGcCGCUCGCaGGCGGGGAAGAgGc -3'
miRNA:   3'- aGCaGCGAGUGcUUGCUCUUUCUgCu -5'
16013 3' -49.9 NC_004065.1 + 59448 0.71 0.975568
Target:  5'- gUCGUCGUgauccgCGCGAACGAGAccacguucgccAGGAUa- -3'
miRNA:   3'- -AGCAGCGa-----GUGCUUGCUCU-----------UUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 194704 0.71 0.975568
Target:  5'- gUGUCGUcCAUccGCGAGAAGGGCGGc -3'
miRNA:   3'- aGCAGCGaGUGcuUGCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 198782 0.71 0.978
Target:  5'- aCGaUCGgaCACGGucGCGAGGAAGAgGAc -3'
miRNA:   3'- aGC-AGCgaGUGCU--UGCUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 180458 0.71 0.978
Target:  5'- cUCGUCGCgaugCACGGcuACGuGGccGGCGAu -3'
miRNA:   3'- -AGCAGCGa---GUGCU--UGCuCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 98740 0.71 0.978
Target:  5'- cCGUCGCUCACcaacccccgGAGgGAGAAGGcGCGc -3'
miRNA:   3'- aGCAGCGAGUG---------CUUgCUCUUUC-UGCu -5'
16013 3' -49.9 NC_004065.1 + 217978 0.71 0.980248
Target:  5'- aUCGcCGCUCgcagACGAACGAGcaAAAGcCGAu -3'
miRNA:   3'- -AGCaGCGAG----UGCUUGCUC--UUUCuGCU- -5'
16013 3' -49.9 NC_004065.1 + 130681 0.71 0.982321
Target:  5'- ---aCGCUCGuCGGGCGAG-GAGGCGGa -3'
miRNA:   3'- agcaGCGAGU-GCUUGCUCuUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 164866 0.71 0.982321
Target:  5'- uUUGaCGCUgACGAgccGCGAGcgGGACGAu -3'
miRNA:   3'- -AGCaGCGAgUGCU---UGCUCuuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 135550 0.71 0.982321
Target:  5'- aCGUCGgaCggGCGGACGAcgGGGAGGCGGc -3'
miRNA:   3'- aGCAGCgaG--UGCUUGCU--CUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 66574 0.71 0.982321
Target:  5'- cUCGUCGCUgGCGAGCGccugccgcacGAuGGACGc -3'
miRNA:   3'- -AGCAGCGAgUGCUUGCu---------CUuUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 75173 0.71 0.984226
Target:  5'- gUGUCGCgUCAUGAccucuuucuGCGAGAucucgcGGACGAu -3'
miRNA:   3'- aGCAGCG-AGUGCU---------UGCUCUu-----UCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.