miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 105447 0.71 0.984226
Target:  5'- aCGUgGCg-ACGGACGAGAAcguGACGGc -3'
miRNA:   3'- aGCAgCGagUGCUUGCUCUUu--CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 78225 0.7 0.985971
Target:  5'- -gGUCGCUgAUGAGCGcGGAGAGgACGu -3'
miRNA:   3'- agCAGCGAgUGCUUGC-UCUUUC-UGCu -5'
16013 3' -49.9 NC_004065.1 + 6256 0.7 0.985971
Target:  5'- cUGUCGUgcggCGgGGACGAGAGGGAgcCGAc -3'
miRNA:   3'- aGCAGCGa---GUgCUUGCUCUUUCU--GCU- -5'
16013 3' -49.9 NC_004065.1 + 209195 0.7 0.985971
Target:  5'- cCGgCGCUUuccucgACGAcccuCGAGAAGGACGAu -3'
miRNA:   3'- aGCaGCGAG------UGCUu---GCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 98648 0.7 0.987101
Target:  5'- -gGUCGCUCguACGuacgcgcgguugcuGACGGGggGGACGc -3'
miRNA:   3'- agCAGCGAG--UGC--------------UUGCUCuuUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 139993 0.7 0.987564
Target:  5'- cCGUCGC-CAUGAGCGuGGAGcuGACGc -3'
miRNA:   3'- aGCAGCGaGUGCUUGCuCUUU--CUGCu -5'
16013 3' -49.9 NC_004065.1 + 166949 0.7 0.987564
Target:  5'- cCGUCGCUCGCcGGCGAcc--GGCGAc -3'
miRNA:   3'- aGCAGCGAGUGcUUGCUcuuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 111381 0.7 0.988593
Target:  5'- gUCGUCGUccgaCGcCGAggaggaggaagaagACGAGGAGGACGAc -3'
miRNA:   3'- -AGCAGCGa---GU-GCU--------------UGCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 101320 0.7 0.989013
Target:  5'- aCGU-GCUCAgGAACcagGAGggGGACGu -3'
miRNA:   3'- aGCAgCGAGUgCUUG---CUCuuUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 102905 0.7 0.989013
Target:  5'- cCGcCGC-CGCGAugGGGGAgaacuGGACGGc -3'
miRNA:   3'- aGCaGCGaGUGCUugCUCUU-----UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 176594 0.7 0.989013
Target:  5'- cCGUCGgUCG-GGGCGAGAAcGACGu -3'
miRNA:   3'- aGCAGCgAGUgCUUGCUCUUuCUGCu -5'
16013 3' -49.9 NC_004065.1 + 111946 0.7 0.990328
Target:  5'- cCGUCGCgguggACGAuuACGGGGuggAGGACGAa -3'
miRNA:   3'- aGCAGCGag---UGCU--UGCUCU---UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 113311 0.7 0.990328
Target:  5'- aCGcCGCUCGCGcgccggacGCGGGAucGAUGAu -3'
miRNA:   3'- aGCaGCGAGUGCu-------UGCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 59888 0.7 0.991516
Target:  5'- uUCGUCGgggucaUCAUGAGCGgcgucugcucgAGAAAGACGu -3'
miRNA:   3'- -AGCAGCg-----AGUGCUUGC-----------UCUUUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 141315 0.7 0.991957
Target:  5'- cCGcCGCUCGCGccGCGAGAAcgucauguacgacgcGGACGu -3'
miRNA:   3'- aGCaGCGAGUGCu-UGCUCUU---------------UCUGCu -5'
16013 3' -49.9 NC_004065.1 + 20836 0.69 0.992276
Target:  5'- gUCGUCGaggaaagcgccggucCGCGAGCGguagguAGAGAGGCGAg -3'
miRNA:   3'- -AGCAGCga-------------GUGCUUGC------UCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 29845 0.69 0.992585
Target:  5'- gCGUCGUUC-CGAcCGAGGagcuGAGAUGGu -3'
miRNA:   3'- aGCAGCGAGuGCUuGCUCU----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 109308 0.69 0.992585
Target:  5'- gUCGUCGUUUACGA-CGGagcuGAAagcGGGCGAg -3'
miRNA:   3'- -AGCAGCGAGUGCUuGCU----CUU---UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 175770 0.69 0.992585
Target:  5'- -gGUCGC---CGGACGGGAGAuGACGAu -3'
miRNA:   3'- agCAGCGaguGCUUGCUCUUU-CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 29242 0.69 0.993361
Target:  5'- cCGUCGCccgccaccgccgCGCG-ACGAGAGAG-CGAc -3'
miRNA:   3'- aGCAGCGa-----------GUGCuUGCUCUUUCuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.