miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 67150 0.69 0.993545
Target:  5'- aCG-CGaUCGCGGACGAGAAGG-UGAa -3'
miRNA:   3'- aGCaGCgAGUGCUUGCUCUUUCuGCU- -5'
16013 3' -49.9 NC_004065.1 + 179210 0.69 0.993545
Target:  5'- uUCGg-GCcCGUGGACGAGGAAGAUGAa -3'
miRNA:   3'- -AGCagCGaGUGCUUGCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 88160 0.69 0.993545
Target:  5'- gCGccCGCUCGcCGGACGAGcggcGGACGGg -3'
miRNA:   3'- aGCa-GCGAGU-GCUUGCUCuu--UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 33879 0.69 0.993545
Target:  5'- ---aUGUaCACGAACGAGGAGGAgGAc -3'
miRNA:   3'- agcaGCGaGUGCUUGCUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 80676 0.69 0.994402
Target:  5'- cUGUCGCUCagcgaguugGCGAACGucaucuacGAGACGAg -3'
miRNA:   3'- aGCAGCGAG---------UGCUUGCucu-----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 168505 0.69 0.994402
Target:  5'- cCGUCGCUCGCu--CGAGAuAGuAUGGu -3'
miRNA:   3'- aGCAGCGAGUGcuuGCUCUuUC-UGCU- -5'
16013 3' -49.9 NC_004065.1 + 30627 0.69 0.994402
Target:  5'- -aGUCGagcggcacCugGGACGAGAuGGACGAc -3'
miRNA:   3'- agCAGCga------GugCUUGCUCUuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 31332 0.69 0.994402
Target:  5'- cUCGU-GCUguCGGGCGAGuacGGACGGg -3'
miRNA:   3'- -AGCAgCGAguGCUUGCUCuu-UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 102147 0.69 0.994402
Target:  5'- gUCGUCGaucucgggCACGGugagguaccugGCGAGgcAGACGAg -3'
miRNA:   3'- -AGCAGCga------GUGCU-----------UGCUCuuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 184785 0.69 0.995165
Target:  5'- aCGaCGCg-ACGGGCgGAGGAGGACGGu -3'
miRNA:   3'- aGCaGCGagUGCUUG-CUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 20815 0.69 0.995165
Target:  5'- aUGUaCGCUCAUcAugGAGAAAG-CGAc -3'
miRNA:   3'- aGCA-GCGAGUGcUugCUCUUUCuGCU- -5'
16013 3' -49.9 NC_004065.1 + 200640 0.69 0.995165
Target:  5'- gCGUCGCgcuCGAgGCGAGAucGGCGu -3'
miRNA:   3'- aGCAGCGaguGCU-UGCUCUuuCUGCu -5'
16013 3' -49.9 NC_004065.1 + 76013 0.69 0.995165
Target:  5'- aCGUCGCcgccgccgcCGCGAacACGAcAGAGACGAc -3'
miRNA:   3'- aGCAGCGa--------GUGCU--UGCUcUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 121477 0.69 0.995841
Target:  5'- gUCGgCGCgucCGCGGGCGuGAAGGugGc -3'
miRNA:   3'- -AGCaGCGa--GUGCUUGCuCUUUCugCu -5'
16013 3' -49.9 NC_004065.1 + 69226 0.69 0.995841
Target:  5'- cCGUCGCU---GAACGAGAucaAGGGCGu -3'
miRNA:   3'- aGCAGCGAgugCUUGCUCU---UUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 111106 0.69 0.995841
Target:  5'- cUGUCGUUCACGAucacCGGcauGAAGGACa- -3'
miRNA:   3'- aGCAGCGAGUGCUu---GCU---CUUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 90356 0.69 0.995841
Target:  5'- gCGUCGCg-AUGAACGcGAucccAAGACGAc -3'
miRNA:   3'- aGCAGCGagUGCUUGCuCU----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 168696 0.69 0.996089
Target:  5'- -gGUCGC-CGCGGcucucgccgucgaguGCGAGGucGACGGg -3'
miRNA:   3'- agCAGCGaGUGCU---------------UGCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 55988 0.68 0.996437
Target:  5'- aUCGUCGUacauguaCACGAAgccauCGAGGuuGACGAg -3'
miRNA:   3'- -AGCAGCGa------GUGCUU-----GCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 63426 0.68 0.996437
Target:  5'- aCGUCGCUC-CGGGCGuGAucGAg-- -3'
miRNA:   3'- aGCAGCGAGuGCUUGCuCUuuCUgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.