miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 184733 0.66 0.99962
Target:  5'- cUGUCGau--CGGAgGAGGAAGAUGAu -3'
miRNA:   3'- aGCAGCgaguGCUUgCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 197214 0.66 0.99962
Target:  5'- -aGUCGCggaaCGCGAGCaucacgcgGAGAAAcGAUGAg -3'
miRNA:   3'- agCAGCGa---GUGCUUG--------CUCUUU-CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 57713 0.66 0.99962
Target:  5'- uUCGuUCGUUCgugcgauucaccGCGGGCGAGAgGAGGgGAg -3'
miRNA:   3'- -AGC-AGCGAG------------UGCUUGCUCU-UUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 80312 0.66 0.99962
Target:  5'- gCGgUGCg-GCGAACGAGAucGACGc -3'
miRNA:   3'- aGCaGCGagUGCUUGCUCUuuCUGCu -5'
16013 3' -49.9 NC_004065.1 + 221821 0.66 0.99962
Target:  5'- aUCGUCGUUUAUcagaAGCGAGGuuGGGGCGu -3'
miRNA:   3'- -AGCAGCGAGUGc---UUGCUCU--UUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 141355 0.66 0.999528
Target:  5'- gUCGUcCGCUCGCGggUGcu---GGCGGc -3'
miRNA:   3'- -AGCA-GCGAGUGCuuGCucuuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 130717 0.66 0.999528
Target:  5'- gCGUCGa--GCGAuuACGAGGAgggaGGGCGGu -3'
miRNA:   3'- aGCAGCgagUGCU--UGCUCUU----UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 197652 0.66 0.999528
Target:  5'- ---aCGCUCAUGAugGAGcuGGAUa- -3'
miRNA:   3'- agcaGCGAGUGCUugCUCuuUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 117458 0.66 0.999528
Target:  5'- aCGcCGCcCAUGGACaAGAAGGAgGAa -3'
miRNA:   3'- aGCaGCGaGUGCUUGcUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 62959 0.66 0.999528
Target:  5'- ----gGCUCGCGAGCGAGcu-GAcCGAa -3'
miRNA:   3'- agcagCGAGUGCUUGCUCuuuCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 118594 0.66 0.999418
Target:  5'- aUCGUCGgggcccugcauCUCACaGACGGGGAGGAaucCGGc -3'
miRNA:   3'- -AGCAGC-----------GAGUGcUUGCUCUUUCU---GCU- -5'
16013 3' -49.9 NC_004065.1 + 211758 0.66 0.999418
Target:  5'- aUCGgCGCUacucCGAGCGAcgccuccagucGGGAGACGAc -3'
miRNA:   3'- -AGCaGCGAgu--GCUUGCU-----------CUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 1060 0.66 0.999418
Target:  5'- -gGUCGCUCGaucUGAGCGucucGAGAUGAg -3'
miRNA:   3'- agCAGCGAGU---GCUUGCucu-UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 147626 0.67 0.999285
Target:  5'- -gGUCGUcaacaacagCACGGGCGAGAucGACu- -3'
miRNA:   3'- agCAGCGa--------GUGCUUGCUCUuuCUGcu -5'
16013 3' -49.9 NC_004065.1 + 83865 0.67 0.999285
Target:  5'- uUCGUCGaguUgAUGAACu-GAAAGACGAc -3'
miRNA:   3'- -AGCAGCg--AgUGCUUGcuCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 145695 0.67 0.999285
Target:  5'- cCGcCGCUaACGGGCGGGGguAGGAgGAg -3'
miRNA:   3'- aGCaGCGAgUGCUUGCUCU--UUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 6600 0.67 0.999285
Target:  5'- -gGUCGC-CACacACGuGGGAAGGCGAu -3'
miRNA:   3'- agCAGCGaGUGcuUGC-UCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 186738 0.67 0.999285
Target:  5'- gUCGUCGUcuggUCGCGGGuCGAcGAcGACGAc -3'
miRNA:   3'- -AGCAGCG----AGUGCUU-GCUcUUuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 112300 0.67 0.999128
Target:  5'- aCGgugCGCgCGCGAgagacGCGAGGGuGACGGg -3'
miRNA:   3'- aGCa--GCGaGUGCU-----UGCUCUUuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 111710 0.67 0.999128
Target:  5'- gCGguccCGCUgGCG-ACGAGAAcgccgaugaGGACGAu -3'
miRNA:   3'- aGCa---GCGAgUGCuUGCUCUU---------UCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.