miRNA display CGI


Results 41 - 60 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 112300 0.67 0.999128
Target:  5'- aCGgugCGCgCGCGAgagacGCGAGGGuGACGGg -3'
miRNA:   3'- aGCa--GCGaGUGCU-----UGCUCUUuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 111710 0.67 0.999128
Target:  5'- gCGguccCGCUgGCG-ACGAGAAcgccgaugaGGACGAu -3'
miRNA:   3'- aGCa---GCGAgUGCuUGCUCUU---------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 28283 0.67 0.999001
Target:  5'- gCGUgcugUGCUCcgaggugGCGAACGAGAucacgucgccccgugAAGACGGa -3'
miRNA:   3'- aGCA----GCGAG-------UGCUUGCUCU---------------UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 164214 0.67 0.998942
Target:  5'- aUCG-CGUUCACGAucgccucgauccGCGGGAu-GAUGAu -3'
miRNA:   3'- -AGCaGCGAGUGCU------------UGCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 119847 0.67 0.998942
Target:  5'- gCGUCGCggccgcCGCaGAGguCGGGGAAGACGu -3'
miRNA:   3'- aGCAGCGa-----GUG-CUU--GCUCUUUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 36169 0.67 0.998942
Target:  5'- -aGUCGC-CGCGGACGAagc-GACGGc -3'
miRNA:   3'- agCAGCGaGUGCUUGCUcuuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 118762 0.67 0.998722
Target:  5'- cUC-UCGgUCACGGcgccgACGAGGcaGAGGCGAu -3'
miRNA:   3'- -AGcAGCgAGUGCU-----UGCUCU--UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 143889 0.67 0.998722
Target:  5'- cUCGUCagGUgCGCGGACGGGAcGGugGu -3'
miRNA:   3'- -AGCAG--CGaGUGCUUGCUCUuUCugCu -5'
16013 3' -49.9 NC_004065.1 + 188654 0.67 0.998722
Target:  5'- aUGUcCGCUCgaggGCGcGCGGcGGGAGACGAc -3'
miRNA:   3'- aGCA-GCGAG----UGCuUGCU-CUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 194353 0.67 0.998722
Target:  5'- cUCcUgGCUCGCGAGCGAcgu-GGCGAu -3'
miRNA:   3'- -AGcAgCGAGUGCUUGCUcuuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 56391 0.67 0.998722
Target:  5'- gUCGgaggCGCUC-CGAucaGCGAGu--GGCGAu -3'
miRNA:   3'- -AGCa---GCGAGuGCU---UGCUCuuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 153661 0.67 0.998722
Target:  5'- gCGgCGCcggCGCGAugGAGAucGACa- -3'
miRNA:   3'- aGCaGCGa--GUGCUugCUCUuuCUGcu -5'
16013 3' -49.9 NC_004065.1 + 143020 0.67 0.998722
Target:  5'- -aGUCGCuaUCACu-ACGGGGAAGACc- -3'
miRNA:   3'- agCAGCG--AGUGcuUGCUCUUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 82428 0.67 0.998722
Target:  5'- gUGUUGgUCugGuccuGCGAG-AGGACGAu -3'
miRNA:   3'- aGCAGCgAGugCu---UGCUCuUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 133394 0.67 0.998466
Target:  5'- ----aGCUCGCGAccgccgGCGAcGAGGACGAa -3'
miRNA:   3'- agcagCGAGUGCU------UGCUcUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 65153 0.67 0.998438
Target:  5'- aUCGUccCGCUCGCGGcucgucaGCGucAAAGACGu -3'
miRNA:   3'- -AGCA--GCGAGUGCU-------UGCucUUUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 199422 0.68 0.998167
Target:  5'- gCGUCGCUgccucggaaCGCGGACGAGGcgcucgccgcGGCGGa -3'
miRNA:   3'- aGCAGCGA---------GUGCUUGCUCUuu--------CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 140057 0.68 0.998167
Target:  5'- uUCGUCGCgacggUCACG-GCGcuGAAccAGACGAu -3'
miRNA:   3'- -AGCAGCG-----AGUGCuUGCu-CUU--UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 176297 0.68 0.998135
Target:  5'- aUCGUCGUgaUCAuugacagaugaauUGGGgGAGGAGGGCGGu -3'
miRNA:   3'- -AGCAGCG--AGU-------------GCUUgCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 189564 0.68 0.99782
Target:  5'- -aGUCcgaGCUCGaGAGCGAGGGAGAUa- -3'
miRNA:   3'- agCAG---CGAGUgCUUGCUCUUUCUGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.