miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 89953 0.68 0.99782
Target:  5'- gCGUCGCcucaacggcuuUCugGgAGCcGGAGGGACGAc -3'
miRNA:   3'- aGCAGCG-----------AGugC-UUGcUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 835 0.68 0.997783
Target:  5'- aCGUCGUUCACGGagguguuACGcGGAGcgcaugacugccGGGCGAg -3'
miRNA:   3'- aGCAGCGAGUGCU-------UGC-UCUU------------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 96412 0.68 0.997421
Target:  5'- uUUG-CGCUCGCGAGCGGcGGcacGGCGGa -3'
miRNA:   3'- -AGCaGCGAGUGCUUGCU-CUuu-CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 122807 0.68 0.997421
Target:  5'- gUGUCaGCUCAUG-GCGAacGGGACGAg -3'
miRNA:   3'- aGCAG-CGAGUGCuUGCUcuUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 70338 0.68 0.997421
Target:  5'- uUCGcCGaaCUgGCGAACGAGAucgagagccgcAGGACGGa -3'
miRNA:   3'- -AGCaGC--GAgUGCUUGCUCU-----------UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 69157 0.68 0.997421
Target:  5'- cUGUCGa-CGCuGGACGAGGcgGAGGCGAa -3'
miRNA:   3'- aGCAGCgaGUG-CUUGCUCU--UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 124845 0.68 0.997421
Target:  5'- uUCGUCGCUUuCGugucaccgauccAugGGGAGAGACc- -3'
miRNA:   3'- -AGCAGCGAGuGC------------UugCUCUUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 165497 0.68 0.996962
Target:  5'- cCGUCGCgccgCAgcugcugcguggUGAGCGAGA--GACGAa -3'
miRNA:   3'- aGCAGCGa---GU------------GCUUGCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 222824 0.68 0.996962
Target:  5'- ---aCGCacgCAcCGAACGAGAAgcAGACGAg -3'
miRNA:   3'- agcaGCGa--GU-GCUUGCUCUU--UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 55202 0.68 0.996962
Target:  5'- -aGUCaGCgaCGCGAACGAGcGAGAgCGAa -3'
miRNA:   3'- agCAG-CGa-GUGCUUGCUCuUUCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 88080 0.68 0.996437
Target:  5'- gUCGUCGCcauaUCugGAuuucgcCGAcccGGAGGACGAu -3'
miRNA:   3'- -AGCAGCG----AGugCUu-----GCU---CUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 60883 0.68 0.996437
Target:  5'- aUCGUgCGCUCGCGAGCGucucgGGAAcuGCu- -3'
miRNA:   3'- -AGCA-GCGAGUGCUUGC-----UCUUucUGcu -5'
16013 3' -49.9 NC_004065.1 + 55988 0.68 0.996437
Target:  5'- aUCGUCGUacauguaCACGAAgccauCGAGGuuGACGAg -3'
miRNA:   3'- -AGCAGCGa------GUGCUU-----GCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 216883 0.68 0.996437
Target:  5'- -gGUCGUUCGCGGcggcGCGAGGu--GCGAg -3'
miRNA:   3'- agCAGCGAGUGCU----UGCUCUuucUGCU- -5'
16013 3' -49.9 NC_004065.1 + 113811 0.68 0.996437
Target:  5'- aCGuuUCGCUCuGCGggUuGGGGAGGCGGa -3'
miRNA:   3'- aGC--AGCGAG-UGCuuGcUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 76969 0.68 0.996437
Target:  5'- cUCGUCGaccgaCUC-CGGGCGGGA--GACGAu -3'
miRNA:   3'- -AGCAGC-----GAGuGCUUGCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 63426 0.68 0.996437
Target:  5'- aCGUCGCUC-CGGGCGuGAucGAg-- -3'
miRNA:   3'- aGCAGCGAGuGCUUGCuCUuuCUgcu -5'
16013 3' -49.9 NC_004065.1 + 153067 0.68 0.996437
Target:  5'- -aGUCGgUCGacgaGGAUGAGGAGGAgGAc -3'
miRNA:   3'- agCAGCgAGUg---CUUGCUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 22492 0.68 0.996437
Target:  5'- aCGaCGCggagCGCGcGGCGAGGAGGAcCGAc -3'
miRNA:   3'- aGCaGCGa---GUGC-UUGCUCUUUCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 37423 0.68 0.996437
Target:  5'- aCGgcgCGUUCACGcuggagcGCGuGGAAGACGGa -3'
miRNA:   3'- aGCa--GCGAGUGCu------UGCuCUUUCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.