Results 81 - 100 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 168696 | 0.69 | 0.996089 |
Target: 5'- -gGUCGC-CGCGGcucucgccgucgaguGCGAGGucGACGGg -3' miRNA: 3'- agCAGCGaGUGCU---------------UGCUCUuuCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 121477 | 0.69 | 0.995841 |
Target: 5'- gUCGgCGCgucCGCGGGCGuGAAGGugGc -3' miRNA: 3'- -AGCaGCGa--GUGCUUGCuCUUUCugCu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 90356 | 0.69 | 0.995841 |
Target: 5'- gCGUCGCg-AUGAACGcGAucccAAGACGAc -3' miRNA: 3'- aGCAGCGagUGCUUGCuCU----UUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 69226 | 0.69 | 0.995841 |
Target: 5'- cCGUCGCU---GAACGAGAucaAGGGCGu -3' miRNA: 3'- aGCAGCGAgugCUUGCUCU---UUCUGCu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 111106 | 0.69 | 0.995841 |
Target: 5'- cUGUCGUUCACGAucacCGGcauGAAGGACa- -3' miRNA: 3'- aGCAGCGAGUGCUu---GCU---CUUUCUGcu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 184785 | 0.69 | 0.995165 |
Target: 5'- aCGaCGCg-ACGGGCgGAGGAGGACGGu -3' miRNA: 3'- aGCaGCGagUGCUUG-CUCUUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 20815 | 0.69 | 0.995165 |
Target: 5'- aUGUaCGCUCAUcAugGAGAAAG-CGAc -3' miRNA: 3'- aGCA-GCGAGUGcUugCUCUUUCuGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 200640 | 0.69 | 0.995165 |
Target: 5'- gCGUCGCgcuCGAgGCGAGAucGGCGu -3' miRNA: 3'- aGCAGCGaguGCU-UGCUCUuuCUGCu -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 76013 | 0.69 | 0.995165 |
Target: 5'- aCGUCGCcgccgccgcCGCGAacACGAcAGAGACGAc -3' miRNA: 3'- aGCAGCGa--------GUGCU--UGCUcUUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 80676 | 0.69 | 0.994402 |
Target: 5'- cUGUCGCUCagcgaguugGCGAACGucaucuacGAGACGAg -3' miRNA: 3'- aGCAGCGAG---------UGCUUGCucu-----UUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 31332 | 0.69 | 0.994402 |
Target: 5'- cUCGU-GCUguCGGGCGAGuacGGACGGg -3' miRNA: 3'- -AGCAgCGAguGCUUGCUCuu-UCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 168505 | 0.69 | 0.994402 |
Target: 5'- cCGUCGCUCGCu--CGAGAuAGuAUGGu -3' miRNA: 3'- aGCAGCGAGUGcuuGCUCUuUC-UGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 102147 | 0.69 | 0.994402 |
Target: 5'- gUCGUCGaucucgggCACGGugagguaccugGCGAGgcAGACGAg -3' miRNA: 3'- -AGCAGCga------GUGCU-----------UGCUCuuUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 30627 | 0.69 | 0.994402 |
Target: 5'- -aGUCGagcggcacCugGGACGAGAuGGACGAc -3' miRNA: 3'- agCAGCga------GugCUUGCUCUuUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 33879 | 0.69 | 0.993545 |
Target: 5'- ---aUGUaCACGAACGAGGAGGAgGAc -3' miRNA: 3'- agcaGCGaGUGCUUGCUCUUUCUgCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 179210 | 0.69 | 0.993545 |
Target: 5'- uUCGg-GCcCGUGGACGAGGAAGAUGAa -3' miRNA: 3'- -AGCagCGaGUGCUUGCUCUUUCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 67150 | 0.69 | 0.993545 |
Target: 5'- aCG-CGaUCGCGGACGAGAAGG-UGAa -3' miRNA: 3'- aGCaGCgAGUGCUUGCUCUUUCuGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 88160 | 0.69 | 0.993545 |
Target: 5'- gCGccCGCUCGcCGGACGAGcggcGGACGGg -3' miRNA: 3'- aGCa-GCGAGU-GCUUGCUCuu--UCUGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 29242 | 0.69 | 0.993361 |
Target: 5'- cCGUCGCccgccaccgccgCGCG-ACGAGAGAG-CGAc -3' miRNA: 3'- aGCAGCGa-----------GUGCuUGCUCUUUCuGCU- -5' |
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16013 | 3' | -49.9 | NC_004065.1 | + | 109308 | 0.69 | 0.992585 |
Target: 5'- gUCGUCGUUUACGA-CGGagcuGAAagcGGGCGAg -3' miRNA: 3'- -AGCAGCGAGUGCUuGCU----CUU---UCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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