miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 835 0.68 0.997783
Target:  5'- aCGUCGUUCACGGagguguuACGcGGAGcgcaugacugccGGGCGAg -3'
miRNA:   3'- aGCAGCGAGUGCU-------UGC-UCUU------------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 1060 0.66 0.999418
Target:  5'- -gGUCGCUCGaucUGAGCGucucGAGAUGAg -3'
miRNA:   3'- agCAGCGAGU---GCUUGCucu-UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 6256 0.7 0.985971
Target:  5'- cUGUCGUgcggCGgGGACGAGAGGGAgcCGAc -3'
miRNA:   3'- aGCAGCGa---GUgCUUGCUCUUUCU--GCU- -5'
16013 3' -49.9 NC_004065.1 + 6600 0.67 0.999285
Target:  5'- -gGUCGC-CACacACGuGGGAAGGCGAu -3'
miRNA:   3'- agCAGCGaGUGcuUGC-UCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 15382 0.66 0.999758
Target:  5'- aCGUCGCcaUCACGGACGAau---GCGGu -3'
miRNA:   3'- aGCAGCG--AGUGCUUGCUcuuucUGCU- -5'
16013 3' -49.9 NC_004065.1 + 17626 0.72 0.960411
Target:  5'- -gGUCGCggCGCGucuuGCGAGGAAGAuCGGc -3'
miRNA:   3'- agCAGCGa-GUGCu---UGCUCUUUCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 20815 0.69 0.995165
Target:  5'- aUGUaCGCUCAUcAugGAGAAAG-CGAc -3'
miRNA:   3'- aGCA-GCGAGUGcUugCUCUUUCuGCU- -5'
16013 3' -49.9 NC_004065.1 + 20836 0.69 0.992276
Target:  5'- gUCGUCGaggaaagcgccggucCGCGAGCGguagguAGAGAGGCGAg -3'
miRNA:   3'- -AGCAGCga-------------GUGCUUGC------UCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 22492 0.68 0.996437
Target:  5'- aCGaCGCggagCGCGcGGCGAGGAGGAcCGAc -3'
miRNA:   3'- aGCaGCGa---GUGC-UUGCUCUUUCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 26357 0.66 0.99962
Target:  5'- aUCGgCGCUgGCGAcggcgGCGGGGAuacgGGGCGu -3'
miRNA:   3'- -AGCaGCGAgUGCU-----UGCUCUU----UCUGCu -5'
16013 3' -49.9 NC_004065.1 + 28283 0.67 0.999001
Target:  5'- gCGUgcugUGCUCcgaggugGCGAACGAGAucacgucgccccgugAAGACGGa -3'
miRNA:   3'- aGCA----GCGAG-------UGCUUGCUCU---------------UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 29242 0.69 0.993361
Target:  5'- cCGUCGCccgccaccgccgCGCG-ACGAGAGAG-CGAc -3'
miRNA:   3'- aGCAGCGa-----------GUGCuUGCUCUUUCuGCU- -5'
16013 3' -49.9 NC_004065.1 + 29845 0.69 0.992585
Target:  5'- gCGUCGUUC-CGAcCGAGGagcuGAGAUGGu -3'
miRNA:   3'- aGCAGCGAGuGCUuGCUCU----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 30627 0.69 0.994402
Target:  5'- -aGUCGagcggcacCugGGACGAGAuGGACGAc -3'
miRNA:   3'- agCAGCga------GugCUUGCUCUuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 31274 0.75 0.887672
Target:  5'- -gGUCGC-CACGGACggaGAGGAGGACGu -3'
miRNA:   3'- agCAGCGaGUGCUUG---CUCUUUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 31332 0.69 0.994402
Target:  5'- cUCGU-GCUguCGGGCGAGuacGGACGGg -3'
miRNA:   3'- -AGCAgCGAguGCUUGCUCuu-UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 33049 0.74 0.929848
Target:  5'- aCGUCGCggacgcaGCGGAUGAGAAAGAgcaUGAa -3'
miRNA:   3'- aGCAGCGag-----UGCUUGCUCUUUCU---GCU- -5'
16013 3' -49.9 NC_004065.1 + 33202 0.75 0.880718
Target:  5'- aCGUCGUacaugaggUCGCGGGCGAGGuguccgcAGACGAg -3'
miRNA:   3'- aGCAGCG--------AGUGCUUGCUCUu------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 33879 0.69 0.993545
Target:  5'- ---aUGUaCACGAACGAGGAGGAgGAc -3'
miRNA:   3'- agcaGCGaGUGCUUGCUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 35677 0.76 0.873542
Target:  5'- aCGUCGCUCGCGAGCcagGAGAucGcgcgucGCGAc -3'
miRNA:   3'- aGCAGCGAGUGCUUG---CUCUuuC------UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.