miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 36169 0.67 0.998942
Target:  5'- -aGUCGC-CGCGGACGAagc-GACGGc -3'
miRNA:   3'- agCAGCGaGUGCUUGCUcuuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 37423 0.68 0.996437
Target:  5'- aCGgcgCGUUCACGcuggagcGCGuGGAAGACGGa -3'
miRNA:   3'- aGCa--GCGAGUGCu------UGCuCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 52853 0.66 0.999696
Target:  5'- aCGaUC-CUguCG-ACGAGAAAGGCGAa -3'
miRNA:   3'- aGC-AGcGAguGCuUGCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 55202 0.68 0.996962
Target:  5'- -aGUCaGCgaCGCGAACGAGcGAGAgCGAa -3'
miRNA:   3'- agCAG-CGa-GUGCUUGCUCuUUCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 55988 0.68 0.996437
Target:  5'- aUCGUCGUacauguaCACGAAgccauCGAGGuuGACGAg -3'
miRNA:   3'- -AGCAGCGa------GUGCUU-----GCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 56391 0.67 0.998722
Target:  5'- gUCGgaggCGCUC-CGAucaGCGAGu--GGCGAu -3'
miRNA:   3'- -AGCa---GCGAGuGCU---UGCUCuuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 57042 0.66 0.999758
Target:  5'- cUCGUCGUcggCACGA-CGGGcAAGGCc- -3'
miRNA:   3'- -AGCAGCGa--GUGCUuGCUCuUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 57713 0.66 0.99962
Target:  5'- uUCGuUCGUUCgugcgauucaccGCGGGCGAGAgGAGGgGAg -3'
miRNA:   3'- -AGC-AGCGAG------------UGCUUGCUCU-UUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 58227 0.67 0.999128
Target:  5'- aCGUCGCcgcgCACGAAgggcuccucgcUGAGGAAGuucuCGAu -3'
miRNA:   3'- aGCAGCGa---GUGCUU-----------GCUCUUUCu---GCU- -5'
16013 3' -49.9 NC_004065.1 + 59448 0.71 0.975568
Target:  5'- gUCGUCGUgauccgCGCGAACGAGAccacguucgccAGGAUa- -3'
miRNA:   3'- -AGCAGCGa-----GUGCUUGCUCU-----------UUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 59888 0.7 0.991516
Target:  5'- uUCGUCGgggucaUCAUGAGCGgcgucugcucgAGAAAGACGu -3'
miRNA:   3'- -AGCAGCg-----AGUGCUUGC-----------UCUUUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 60883 0.68 0.996437
Target:  5'- aUCGUgCGCUCGCGAGCGucucgGGAAcuGCu- -3'
miRNA:   3'- -AGCA-GCGAGUGCUUGC-----UCUUucUGcu -5'
16013 3' -49.9 NC_004065.1 + 61634 0.66 0.999696
Target:  5'- -gGUCGgUCugG-AUGAGAcgguuggcgcugGAGACGAu -3'
miRNA:   3'- agCAGCgAGugCuUGCUCU------------UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 61981 1.1 0.017015
Target:  5'- gUCGUCGCUCACGAACGAGAAAGACGAc -3'
miRNA:   3'- -AGCAGCGAGUGCUUGCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 62959 0.66 0.999528
Target:  5'- ----gGCUCGCGAGCGAGcu-GAcCGAa -3'
miRNA:   3'- agcagCGAGUGCUUGCUCuuuCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 63426 0.68 0.996437
Target:  5'- aCGUCGCUC-CGGGCGuGAucGAg-- -3'
miRNA:   3'- aGCAGCGAGuGCUUGCuCUuuCUgcu -5'
16013 3' -49.9 NC_004065.1 + 64548 0.66 0.999758
Target:  5'- uUCGUC-CUgGCGAACGAGuaucuGAGccgccGCGGg -3'
miRNA:   3'- -AGCAGcGAgUGCUUGCUCu----UUC-----UGCU- -5'
16013 3' -49.9 NC_004065.1 + 65153 0.67 0.998438
Target:  5'- aUCGUccCGCUCGCGGcucgucaGCGucAAAGACGu -3'
miRNA:   3'- -AGCA--GCGAGUGCU-------UGCucUUUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 66574 0.71 0.982321
Target:  5'- cUCGUCGCUgGCGAGCGccugccgcacGAuGGACGc -3'
miRNA:   3'- -AGCAGCGAgUGCUUGCu---------CUuUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 67150 0.69 0.993545
Target:  5'- aCG-CGaUCGCGGACGAGAAGG-UGAa -3'
miRNA:   3'- aGCaGCgAGUGCUUGCUCUUUCuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.