miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 68102 0.73 0.956739
Target:  5'- -aGUCGCU-ACGGACGGuGAcucGAGACGAg -3'
miRNA:   3'- agCAGCGAgUGCUUGCU-CU---UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 69157 0.68 0.997421
Target:  5'- cUGUCGa-CGCuGGACGAGGcgGAGGCGAa -3'
miRNA:   3'- aGCAGCgaGUG-CUUGCUCU--UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 69226 0.69 0.995841
Target:  5'- cCGUCGCU---GAACGAGAucaAGGGCGu -3'
miRNA:   3'- aGCAGCGAgugCUUGCUCU---UUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 70038 0.74 0.929848
Target:  5'- gCGUCGCucgUCACGGugGAGAcGGccACGAu -3'
miRNA:   3'- aGCAGCG---AGUGCUugCUCUuUC--UGCU- -5'
16013 3' -49.9 NC_004065.1 + 70338 0.68 0.997421
Target:  5'- uUCGcCGaaCUgGCGAACGAGAucgagagccgcAGGACGGa -3'
miRNA:   3'- -AGCaGC--GAgUGCUUGCUCU-----------UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 74793 0.67 0.999128
Target:  5'- gCGgcagCGCUCGCGcaagaugcuGACGAGcguGGAGACGc -3'
miRNA:   3'- aGCa---GCGAGUGC---------UUGCUC---UUUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 74897 0.74 0.913192
Target:  5'- cUCGUa-CUCGCGGGCgcgGAGGAAGGCGAc -3'
miRNA:   3'- -AGCAgcGAGUGCUUG---CUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 75173 0.71 0.984226
Target:  5'- gUGUCGCgUCAUGAccucuuucuGCGAGAucucgcGGACGAu -3'
miRNA:   3'- aGCAGCG-AGUGCU---------UGCUCUu-----UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 76013 0.69 0.995165
Target:  5'- aCGUCGCcgccgccgcCGCGAacACGAcAGAGACGAc -3'
miRNA:   3'- aGCAGCGa--------GUGCU--UGCUcUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 76969 0.68 0.996437
Target:  5'- cUCGUCGaccgaCUC-CGGGCGGGA--GACGAu -3'
miRNA:   3'- -AGCAGC-----GAGuGCUUGCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 78225 0.7 0.985971
Target:  5'- -gGUCGCUgAUGAGCGcGGAGAGgACGu -3'
miRNA:   3'- agCAGCGAgUGCUUGC-UCUUUC-UGCu -5'
16013 3' -49.9 NC_004065.1 + 78613 0.66 0.999628
Target:  5'- gUCGUCGCgccgccugaggugaaCGCGGucgGCGAGGgcGACGu -3'
miRNA:   3'- -AGCAGCGa--------------GUGCU---UGCUCUuuCUGCu -5'
16013 3' -49.9 NC_004065.1 + 80312 0.66 0.99962
Target:  5'- gCGgUGCg-GCGAACGAGAucGACGc -3'
miRNA:   3'- aGCaGCGagUGCUUGCUCUuuCUGCu -5'
16013 3' -49.9 NC_004065.1 + 80676 0.69 0.994402
Target:  5'- cUGUCGCUCagcgaguugGCGAACGucaucuacGAGACGAg -3'
miRNA:   3'- aGCAGCGAG---------UGCUUGCucu-----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 82428 0.67 0.998722
Target:  5'- gUGUUGgUCugGuccuGCGAG-AGGACGAu -3'
miRNA:   3'- aGCAGCgAGugCu---UGCUCuUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 83189 0.66 0.999696
Target:  5'- aCGUCGCUgagCACGAA-GGGAAAuuCGGg -3'
miRNA:   3'- aGCAGCGA---GUGCUUgCUCUUUcuGCU- -5'
16013 3' -49.9 NC_004065.1 + 83865 0.67 0.999285
Target:  5'- uUCGUCGaguUgAUGAACu-GAAAGACGAc -3'
miRNA:   3'- -AGCAGCg--AgUGCUUGcuCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 88080 0.68 0.996437
Target:  5'- gUCGUCGCcauaUCugGAuuucgcCGAcccGGAGGACGAu -3'
miRNA:   3'- -AGCAGCG----AGugCUu-----GCU---CUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 88160 0.69 0.993545
Target:  5'- gCGccCGCUCGcCGGACGAGcggcGGACGGg -3'
miRNA:   3'- aGCa-GCGAGU-GCUUGCUCuu--UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 89953 0.68 0.99782
Target:  5'- gCGUCGCcucaacggcuuUCugGgAGCcGGAGGGACGAc -3'
miRNA:   3'- aGCAGCG-----------AGugC-UUGcUCUUUCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.