miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 90356 0.69 0.995841
Target:  5'- gCGUCGCg-AUGAACGcGAucccAAGACGAc -3'
miRNA:   3'- aGCAGCGagUGCUUGCuCU----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 96412 0.68 0.997421
Target:  5'- uUUG-CGCUCGCGAGCGGcGGcacGGCGGa -3'
miRNA:   3'- -AGCaGCGAGUGCUUGCU-CUuu-CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 97749 0.76 0.850738
Target:  5'- cCGgcUCGUUCAUGGACGAGAucauGGGCGGc -3'
miRNA:   3'- aGC--AGCGAGUGCUUGCUCUu---UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 98648 0.7 0.987101
Target:  5'- -gGUCGCUCguACGuacgcgcgguugcuGACGGGggGGACGc -3'
miRNA:   3'- agCAGCGAG--UGC--------------UUGCUCuuUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 98740 0.71 0.978
Target:  5'- cCGUCGCUCACcaacccccgGAGgGAGAAGGcGCGc -3'
miRNA:   3'- aGCAGCGAGUG---------CUUgCUCUUUC-UGCu -5'
16013 3' -49.9 NC_004065.1 + 99266 0.66 0.999758
Target:  5'- cUCGUCgguguacuGCUCGCGGucgcccACGAcGAGGGGCa- -3'
miRNA:   3'- -AGCAG--------CGAGUGCU------UGCU-CUUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 101320 0.7 0.989013
Target:  5'- aCGU-GCUCAgGAACcagGAGggGGACGu -3'
miRNA:   3'- aGCAgCGAGUgCUUG---CUCuuUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 102147 0.69 0.994402
Target:  5'- gUCGUCGaucucgggCACGGugagguaccugGCGAGgcAGACGAg -3'
miRNA:   3'- -AGCAGCga------GUGCU-----------UGCUCuuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 102905 0.7 0.989013
Target:  5'- cCGcCGC-CGCGAugGGGGAgaacuGGACGGc -3'
miRNA:   3'- aGCaGCGaGUGCUugCUCUU-----UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 105447 0.71 0.984226
Target:  5'- aCGUgGCg-ACGGACGAGAAcguGACGGc -3'
miRNA:   3'- aGCAgCGagUGCUUGCUCUUu--CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 107501 0.66 0.99962
Target:  5'- cUGUCGCUCGaccgcuCGcACGAGGAGGuGCGc -3'
miRNA:   3'- aGCAGCGAGU------GCuUGCUCUUUC-UGCu -5'
16013 3' -49.9 NC_004065.1 + 109308 0.69 0.992585
Target:  5'- gUCGUCGUUUACGA-CGGagcuGAAagcGGGCGAg -3'
miRNA:   3'- -AGCAGCGAGUGCUuGCU----CUU---UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 111106 0.69 0.995841
Target:  5'- cUGUCGUUCACGAucacCGGcauGAAGGACa- -3'
miRNA:   3'- aGCAGCGAGUGCUu---GCU---CUUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 111381 0.7 0.988593
Target:  5'- gUCGUCGUccgaCGcCGAggaggaggaagaagACGAGGAGGACGAc -3'
miRNA:   3'- -AGCAGCGa---GU-GCU--------------UGCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 111710 0.67 0.999128
Target:  5'- gCGguccCGCUgGCG-ACGAGAAcgccgaugaGGACGAu -3'
miRNA:   3'- aGCa---GCGAgUGCuUGCUCUU---------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 111946 0.7 0.990328
Target:  5'- cCGUCGCgguggACGAuuACGGGGuggAGGACGAa -3'
miRNA:   3'- aGCAGCGag---UGCU--UGCUCU---UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 112300 0.67 0.999128
Target:  5'- aCGgugCGCgCGCGAgagacGCGAGGGuGACGGg -3'
miRNA:   3'- aGCa--GCGaGUGCU-----UGCUCUUuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 113311 0.7 0.990328
Target:  5'- aCGcCGCUCGCGcgccggacGCGGGAucGAUGAu -3'
miRNA:   3'- aGCaGCGAGUGCu-------UGCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 113811 0.68 0.996437
Target:  5'- aCGuuUCGCUCuGCGggUuGGGGAGGCGGa -3'
miRNA:   3'- aGC--AGCGAG-UGCuuGcUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 113942 0.66 0.99962
Target:  5'- gCGgCGCUCGgGGGCuGGGAcgGAGACGc -3'
miRNA:   3'- aGCaGCGAGUgCUUG-CUCU--UUCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.