miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 227853 0.8 0.653414
Target:  5'- aUCGUCGUcugggggagaUCACGGACGGGgGGAGACGGc -3'
miRNA:   3'- -AGCAGCG----------AGUGCUUGCUC-UUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 226793 0.74 0.918983
Target:  5'- cCGUCGCUCugGAacaACGAauGAGACa- -3'
miRNA:   3'- aGCAGCGAGugCU---UGCUcuUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 222824 0.68 0.996962
Target:  5'- ---aCGCacgCAcCGAACGAGAAgcAGACGAg -3'
miRNA:   3'- agcaGCGa--GU-GCUUGCUCUU--UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 221821 0.66 0.99962
Target:  5'- aUCGUCGUUUAUcagaAGCGAGGuuGGGGCGu -3'
miRNA:   3'- -AGCAGCGAGUGc---UUGCUCU--UUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 220462 0.74 0.929848
Target:  5'- aUCGUCGaa-ACGGAucuCGGGAGAGACGGc -3'
miRNA:   3'- -AGCAGCgagUGCUU---GCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 218218 0.66 0.999696
Target:  5'- aUCGauaUCGau-GCGAGCGAGAAuguGACGGu -3'
miRNA:   3'- -AGC---AGCgagUGCUUGCUCUUu--CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 217978 0.71 0.980248
Target:  5'- aUCGcCGCUCgcagACGAACGAGcaAAAGcCGAu -3'
miRNA:   3'- -AGCaGCGAG----UGCUUGCUC--UUUCuGCU- -5'
16013 3' -49.9 NC_004065.1 + 216883 0.68 0.996437
Target:  5'- -gGUCGUUCGCGGcggcGCGAGGu--GCGAg -3'
miRNA:   3'- agCAGCGAGUGCU----UGCUCUuucUGCU- -5'
16013 3' -49.9 NC_004065.1 + 211758 0.66 0.999418
Target:  5'- aUCGgCGCUacucCGAGCGAcgccuccagucGGGAGACGAc -3'
miRNA:   3'- -AGCaGCGAgu--GCUUGCU-----------CUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 209195 0.7 0.985971
Target:  5'- cCGgCGCUUuccucgACGAcccuCGAGAAGGACGAu -3'
miRNA:   3'- aGCaGCGAG------UGCUu---GCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 200780 0.66 0.999696
Target:  5'- cUCGUCGCgcgGCGGugGcGGgcGACGGc -3'
miRNA:   3'- -AGCAGCGag-UGCUugCuCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 200640 0.69 0.995165
Target:  5'- gCGUCGCgcuCGAgGCGAGAucGGCGu -3'
miRNA:   3'- aGCAGCGaguGCU-UGCUCUuuCUGCu -5'
16013 3' -49.9 NC_004065.1 + 199422 0.68 0.998167
Target:  5'- gCGUCGCUgccucggaaCGCGGACGAGGcgcucgccgcGGCGGa -3'
miRNA:   3'- aGCAGCGA---------GUGCUUGCUCUuu--------CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 198782 0.71 0.978
Target:  5'- aCGaUCGgaCACGGucGCGAGGAAGAgGAc -3'
miRNA:   3'- aGC-AGCgaGUGCU--UGCUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 197652 0.66 0.999528
Target:  5'- ---aCGCUCAUGAugGAGcuGGAUa- -3'
miRNA:   3'- agcaGCGAGUGCUugCUCuuUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 197214 0.66 0.99962
Target:  5'- -aGUCGCggaaCGCGAGCaucacgcgGAGAAAcGAUGAg -3'
miRNA:   3'- agCAGCGa---GUGCUUG--------CUCUUU-CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 194704 0.71 0.975568
Target:  5'- gUGUCGUcCAUccGCGAGAAGGGCGGc -3'
miRNA:   3'- aGCAGCGaGUGcuUGCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 194353 0.67 0.998722
Target:  5'- cUCcUgGCUCGCGAGCGAcgu-GGCGAu -3'
miRNA:   3'- -AGcAgCGAGUGCUUGCUcuuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 190793 0.72 0.963863
Target:  5'- gUCGUCGuCUCACuGAACaAGAucGAUGAu -3'
miRNA:   3'- -AGCAGC-GAGUG-CUUGcUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 189564 0.68 0.99782
Target:  5'- -aGUCcgaGCUCGaGAGCGAGGGAGAUa- -3'
miRNA:   3'- agCAG---CGAGUgCUUGCUCUUUCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.