miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 188654 0.67 0.998722
Target:  5'- aUGUcCGCUCgaggGCGcGCGGcGGGAGACGAc -3'
miRNA:   3'- aGCA-GCGAG----UGCuUGCU-CUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 188399 0.78 0.752448
Target:  5'- -aGUCGCUCucguccuGCGGGCGAGA-GGGCGAg -3'
miRNA:   3'- agCAGCGAG-------UGCUUGCUCUuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 188341 0.66 0.999696
Target:  5'- gCGUCcCUCGCGAugcucagccccaGCGAGggGG-CGc -3'
miRNA:   3'- aGCAGcGAGUGCU------------UGCUCuuUCuGCu -5'
16013 3' -49.9 NC_004065.1 + 186738 0.67 0.999285
Target:  5'- gUCGUCGUcuggUCGCGGGuCGAcGAcGACGAc -3'
miRNA:   3'- -AGCAGCG----AGUGCUU-GCUcUUuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 184919 0.72 0.963863
Target:  5'- -gGUgGCUCGgGAGCGGccGGGAGACGGu -3'
miRNA:   3'- agCAgCGAGUgCUUGCU--CUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 184785 0.69 0.995165
Target:  5'- aCGaCGCg-ACGGGCgGAGGAGGACGGu -3'
miRNA:   3'- aGCaGCGagUGCUUG-CUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 184733 0.66 0.99962
Target:  5'- cUGUCGau--CGGAgGAGGAAGAUGAu -3'
miRNA:   3'- aGCAGCgaguGCUUgCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 180458 0.71 0.978
Target:  5'- cUCGUCGCgaugCACGGcuACGuGGccGGCGAu -3'
miRNA:   3'- -AGCAGCGa---GUGCU--UGCuCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 179210 0.69 0.993545
Target:  5'- uUCGg-GCcCGUGGACGAGGAAGAUGAa -3'
miRNA:   3'- -AGCagCGaGUGCUUGCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 176886 0.72 0.960411
Target:  5'- gUCGagGCUCugGGAaGGGAGAGACu- -3'
miRNA:   3'- -AGCagCGAGugCUUgCUCUUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 176594 0.7 0.989013
Target:  5'- cCGUCGgUCG-GGGCGAGAAcGACGu -3'
miRNA:   3'- aGCAGCgAGUgCUUGCUCUUuCUGCu -5'
16013 3' -49.9 NC_004065.1 + 176297 0.68 0.998135
Target:  5'- aUCGUCGUgaUCAuugacagaugaauUGGGgGAGGAGGGCGGu -3'
miRNA:   3'- -AGCAGCG--AGU-------------GCUUgCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 175770 0.69 0.992585
Target:  5'- -gGUCGC---CGGACGGGAGAuGACGAu -3'
miRNA:   3'- agCAGCGaguGCUUGCUCUUU-CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 175583 0.73 0.95284
Target:  5'- gCG-CGCgaacaGCGAGCGAGAggcuGAGGCGAa -3'
miRNA:   3'- aGCaGCGag---UGCUUGCUCU----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 174390 0.75 0.907162
Target:  5'- gUGUCGUUCAUGGucggguagACGAGAAAGAgCGGg -3'
miRNA:   3'- aGCAGCGAGUGCU--------UGCUCUUUCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 171990 0.72 0.959333
Target:  5'- aUCGUCGCgaggaUCACGcACGAGAGGaagaucauuccgauGGCGAg -3'
miRNA:   3'- -AGCAGCG-----AGUGCuUGCUCUUU--------------CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 168696 0.69 0.996089
Target:  5'- -gGUCGC-CGCGGcucucgccgucgaguGCGAGGucGACGGg -3'
miRNA:   3'- agCAGCGaGUGCU---------------UGCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 168505 0.69 0.994402
Target:  5'- cCGUCGCUCGCu--CGAGAuAGuAUGGu -3'
miRNA:   3'- aGCAGCGAGUGcuuGCUCUuUC-UGCU- -5'
16013 3' -49.9 NC_004065.1 + 166949 0.7 0.987564
Target:  5'- cCGUCGCUCGCcGGCGAcc--GGCGAc -3'
miRNA:   3'- aGCAGCGAGUGcUUGCUcuuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 166274 0.66 0.999696
Target:  5'- -gGUCGCUgacugaaaaCACG-GCGGGGAAG-CGAu -3'
miRNA:   3'- agCAGCGA---------GUGCuUGCUCUUUCuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.