miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 165497 0.68 0.996962
Target:  5'- cCGUCGCgccgCAgcugcugcguggUGAGCGAGA--GACGAa -3'
miRNA:   3'- aGCAGCGa---GU------------GCUUGCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 165233 0.73 0.948712
Target:  5'- ---aCGCUCACGGAUGGGGucAGGAUGGg -3'
miRNA:   3'- agcaGCGAGUGCUUGCUCU--UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 164866 0.71 0.982321
Target:  5'- uUUGaCGCUgACGAgccGCGAGcgGGACGAu -3'
miRNA:   3'- -AGCaGCGAgUGCU---UGCUCuuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 164605 0.72 0.972945
Target:  5'- cCGcCGCUCGCaGGCGGGGAAGAgGc -3'
miRNA:   3'- aGCaGCGAGUGcUUGCUCUUUCUgCu -5'
16013 3' -49.9 NC_004065.1 + 164214 0.67 0.998942
Target:  5'- aUCG-CGUUCACGAucgccucgauccGCGGGAu-GAUGAu -3'
miRNA:   3'- -AGCaGCGAGUGCU------------UGCUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 157120 0.73 0.956739
Target:  5'- gCG-CGaCUCGCGAACGAGGucGAGuCGAg -3'
miRNA:   3'- aGCaGC-GAGUGCUUGCUCU--UUCuGCU- -5'
16013 3' -49.9 NC_004065.1 + 153661 0.67 0.998722
Target:  5'- gCGgCGCcggCGCGAugGAGAucGACa- -3'
miRNA:   3'- aGCaGCGa--GUGCUugCUCUuuCUGcu -5'
16013 3' -49.9 NC_004065.1 + 153067 0.68 0.996437
Target:  5'- -aGUCGgUCGacgaGGAUGAGGAGGAgGAc -3'
miRNA:   3'- agCAGCgAGUg---CUUGCUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 151464 0.73 0.948712
Target:  5'- cUGUCGCUC-CGGA-GAGGGAGAgGAg -3'
miRNA:   3'- aGCAGCGAGuGCUUgCUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 149576 0.73 0.939755
Target:  5'- cUCGUCGggUACGAacuGCGAGAAgaagcuguugcAGACGAc -3'
miRNA:   3'- -AGCAGCgaGUGCU---UGCUCUU-----------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 147626 0.67 0.999285
Target:  5'- -gGUCGUcaacaacagCACGGGCGAGAucGACu- -3'
miRNA:   3'- agCAGCGa--------GUGCUUGCUCUuuCUGcu -5'
16013 3' -49.9 NC_004065.1 + 146042 0.66 0.999696
Target:  5'- cCGaaggCGC-CACGAcCGAGGAugccgaGGACGAg -3'
miRNA:   3'- aGCa---GCGaGUGCUuGCUCUU------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 145695 0.67 0.999285
Target:  5'- cCGcCGCUaACGGGCGGGGguAGGAgGAg -3'
miRNA:   3'- aGCaGCGAgUGCUUGCUCU--UUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 143889 0.67 0.998722
Target:  5'- cUCGUCagGUgCGCGGACGGGAcGGugGu -3'
miRNA:   3'- -AGCAG--CGaGUGCUUGCUCUuUCugCu -5'
16013 3' -49.9 NC_004065.1 + 143020 0.67 0.998722
Target:  5'- -aGUCGCuaUCACu-ACGGGGAAGACc- -3'
miRNA:   3'- agCAGCG--AGUGcuUGCUCUUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 141355 0.66 0.999528
Target:  5'- gUCGUcCGCUCGCGggUGcu---GGCGGc -3'
miRNA:   3'- -AGCA-GCGAGUGCuuGCucuuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 141315 0.7 0.991957
Target:  5'- cCGcCGCUCGCGccGCGAGAAcgucauguacgacgcGGACGu -3'
miRNA:   3'- aGCaGCGAGUGCu-UGCUCUU---------------UCUGCu -5'
16013 3' -49.9 NC_004065.1 + 140057 0.68 0.998167
Target:  5'- uUCGUCGCgacggUCACG-GCGcuGAAccAGACGAu -3'
miRNA:   3'- -AGCAGCG-----AGUGCuUGCu-CUU--UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 139993 0.7 0.987564
Target:  5'- cCGUCGC-CAUGAGCGuGGAGcuGACGc -3'
miRNA:   3'- aGCAGCGaGUGCUUGCuCUUU--CUGCu -5'
16013 3' -49.9 NC_004065.1 + 135550 0.71 0.982321
Target:  5'- aCGUCGgaCggGCGGACGAcgGGGAGGCGGc -3'
miRNA:   3'- aGCAGCgaG--UGCUUGCU--CUUUCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.