miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 66574 0.71 0.982321
Target:  5'- cUCGUCGCUgGCGAGCGccugccgcacGAuGGACGc -3'
miRNA:   3'- -AGCAGCGAgUGCUUGCu---------CUuUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 171990 0.72 0.959333
Target:  5'- aUCGUCGCgaggaUCACGcACGAGAGGaagaucauuccgauGGCGAg -3'
miRNA:   3'- -AGCAGCG-----AGUGCuUGCUCUUU--------------CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 17626 0.72 0.960411
Target:  5'- -gGUCGCggCGCGucuuGCGAGGAAGAuCGGc -3'
miRNA:   3'- agCAGCGa-GUGCu---UGCUCUUUCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 176886 0.72 0.960411
Target:  5'- gUCGagGCUCugGGAaGGGAGAGACu- -3'
miRNA:   3'- -AGCagCGAGugCUUgCUCUUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 184919 0.72 0.963863
Target:  5'- -gGUgGCUCGgGAGCGGccGGGAGACGGu -3'
miRNA:   3'- agCAgCGAGUgCUUGCU--CUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 132493 0.72 0.967099
Target:  5'- cUGUCGCUCGuCGuguuggucGACGAGAugAAGAUGAu -3'
miRNA:   3'- aGCAGCGAGU-GC--------UUGCUCU--UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 164605 0.72 0.972945
Target:  5'- cCGcCGCUCGCaGGCGGGGAAGAgGc -3'
miRNA:   3'- aGCaGCGAGUGcUUGCUCUUUCUgCu -5'
16013 3' -49.9 NC_004065.1 + 194704 0.71 0.975568
Target:  5'- gUGUCGUcCAUccGCGAGAAGGGCGGc -3'
miRNA:   3'- aGCAGCGaGUGcuUGCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 217978 0.71 0.980248
Target:  5'- aUCGcCGCUCgcagACGAACGAGcaAAAGcCGAu -3'
miRNA:   3'- -AGCaGCGAG----UGCUUGCUC--UUUCuGCU- -5'
16013 3' -49.9 NC_004065.1 + 157120 0.73 0.956739
Target:  5'- gCG-CGaCUCGCGAACGAGGucGAGuCGAg -3'
miRNA:   3'- aGCaGC-GAGUGCUUGCUCU--UUCuGCU- -5'
16013 3' -49.9 NC_004065.1 + 149576 0.73 0.939755
Target:  5'- cUCGUCGggUACGAacuGCGAGAAgaagcuguugcAGACGAc -3'
miRNA:   3'- -AGCAGCgaGUGCU---UGCUCUU-----------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 220462 0.74 0.929848
Target:  5'- aUCGUCGaa-ACGGAucuCGGGAGAGACGGc -3'
miRNA:   3'- -AGCAGCgagUGCUU---GCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 227853 0.8 0.653414
Target:  5'- aUCGUCGUcugggggagaUCACGGACGGGgGGAGACGGc -3'
miRNA:   3'- -AGCAGCG----------AGUGCUUGCUC-UUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 118121 0.77 0.826148
Target:  5'- cUCGUCGCcgCGCGGACGAGGuu-GCGGu -3'
miRNA:   3'- -AGCAGCGa-GUGCUUGCUCUuucUGCU- -5'
16013 3' -49.9 NC_004065.1 + 33202 0.75 0.880718
Target:  5'- aCGUCGUacaugaggUCGCGGGCGAGGuguccgcAGACGAg -3'
miRNA:   3'- aGCAGCG--------AGUGCUUGCUCUu------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 31274 0.75 0.887672
Target:  5'- -gGUCGC-CACGGACggaGAGGAGGACGu -3'
miRNA:   3'- agCAGCGaGUGCUUG---CUCUUUCUGCu -5'
16013 3' -49.9 NC_004065.1 + 174390 0.75 0.907162
Target:  5'- gUGUCGUUCAUGGucggguagACGAGAAAGAgCGGg -3'
miRNA:   3'- aGCAGCGAGUGCU--------UGCUCUUUCU-GCU- -5'
16013 3' -49.9 NC_004065.1 + 74897 0.74 0.913192
Target:  5'- cUCGUa-CUCGCGGGCgcgGAGGAAGGCGAc -3'
miRNA:   3'- -AGCAgcGAGUGCUUG---CUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 70038 0.74 0.929848
Target:  5'- gCGUCGCucgUCACGGugGAGAcGGccACGAu -3'
miRNA:   3'- aGCAGCG---AGUGCUugCUCUuUC--UGCU- -5'
16013 3' -49.9 NC_004065.1 + 33049 0.74 0.929848
Target:  5'- aCGUCGCggacgcaGCGGAUGAGAAAGAgcaUGAa -3'
miRNA:   3'- aGCAGCGag-----UGCUUGCUCUUUCU---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.