Results 61 - 80 of 158 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 20836 | 0.69 | 0.992276 |
Target: 5'- gUCGUCGaggaaagcgccggucCGCGAGCGguagguAGAGAGGCGAg -3' miRNA: 3'- -AGCAGCga-------------GUGCUUGC------UCUUUCUGCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 59888 | 0.7 | 0.991516 |
Target: 5'- uUCGUCGgggucaUCAUGAGCGgcgucugcucgAGAAAGACGu -3' miRNA: 3'- -AGCAGCg-----AGUGCUUGC-----------UCUUUCUGCu -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 113311 | 0.7 | 0.990328 |
Target: 5'- aCGcCGCUCGCGcgccggacGCGGGAucGAUGAu -3' miRNA: 3'- aGCaGCGAGUGCu-------UGCUCUuuCUGCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 101320 | 0.7 | 0.989013 |
Target: 5'- aCGU-GCUCAgGAACcagGAGggGGACGu -3' miRNA: 3'- aGCAgCGAGUgCUUG---CUCuuUCUGCu -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 217978 | 0.71 | 0.980248 |
Target: 5'- aUCGcCGCUCgcagACGAACGAGcaAAAGcCGAu -3' miRNA: 3'- -AGCaGCGAG----UGCUUGCUC--UUUCuGCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 66574 | 0.71 | 0.982321 |
Target: 5'- cUCGUCGCUgGCGAGCGccugccgcacGAuGGACGc -3' miRNA: 3'- -AGCAGCGAgUGCUUGCu---------CUuUCUGCu -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 135550 | 0.71 | 0.982321 |
Target: 5'- aCGUCGgaCggGCGGACGAcgGGGAGGCGGc -3' miRNA: 3'- aGCAGCgaG--UGCUUGCU--CUUUCUGCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 75173 | 0.71 | 0.984226 |
Target: 5'- gUGUCGCgUCAUGAccucuuucuGCGAGAucucgcGGACGAu -3' miRNA: 3'- aGCAGCG-AGUGCU---------UGCUCUu-----UCUGCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 98648 | 0.7 | 0.987101 |
Target: 5'- -gGUCGCUCguACGuacgcgcgguugcuGACGGGggGGACGc -3' miRNA: 3'- agCAGCGAG--UGC--------------UUGCUCuuUCUGCu -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 166949 | 0.7 | 0.987564 |
Target: 5'- cCGUCGCUCGCcGGCGAcc--GGCGAc -3' miRNA: 3'- aGCAGCGAGUGcUUGCUcuuuCUGCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 139993 | 0.7 | 0.987564 |
Target: 5'- cCGUCGC-CAUGAGCGuGGAGcuGACGc -3' miRNA: 3'- aGCAGCGaGUGCUUGCuCUUU--CUGCu -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 118003 | 0.73 | 0.955593 |
Target: 5'- gUCGUCGUccUCGuCGGGCGAGAAacucuuguugucguAGGCGGc -3' miRNA: 3'- -AGCAGCG--AGU-GCUUGCUCUU--------------UCUGCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 175583 | 0.73 | 0.95284 |
Target: 5'- gCG-CGCgaacaGCGAGCGAGAggcuGAGGCGAa -3' miRNA: 3'- aGCaGCGag---UGCUUGCUCU----UUCUGCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 165233 | 0.73 | 0.948712 |
Target: 5'- ---aCGCUCACGGAUGGGGucAGGAUGGg -3' miRNA: 3'- agcaGCGAGUGCUUGCUCU--UUCUGCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 151464 | 0.73 | 0.948712 |
Target: 5'- cUGUCGCUC-CGGA-GAGGGAGAgGAg -3' miRNA: 3'- aGCAGCGAGuGCUUgCUCUUUCUgCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 226793 | 0.74 | 0.918983 |
Target: 5'- cCGUCGCUCugGAacaACGAauGAGACa- -3' miRNA: 3'- aGCAGCGAGugCU---UGCUcuUUCUGcu -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 133605 | 0.75 | 0.887672 |
Target: 5'- gCGUUGCgagCGCGAuuuCGAGgcGGACGAc -3' miRNA: 3'- aGCAGCGa--GUGCUu--GCUCuuUCUGCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 35677 | 0.76 | 0.873542 |
Target: 5'- aCGUCGCUCGCGAGCcagGAGAucGcgcgucGCGAc -3' miRNA: 3'- aGCAGCGAGUGCUUG---CUCUuuC------UGCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 97749 | 0.76 | 0.850738 |
Target: 5'- cCGgcUCGUUCAUGGACGAGAucauGGGCGGc -3' miRNA: 3'- aGC--AGCGAGUGCUUGCUCUu---UCUGCU- -5' |
|||||||
16013 | 3' | -49.9 | NC_004065.1 | + | 99266 | 0.66 | 0.999758 |
Target: 5'- cUCGUCgguguacuGCUCGCGGucgcccACGAcGAGGGGCa- -3' miRNA: 3'- -AGCAG--------CGAGUGCU------UGCU-CUUUCUGcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home