miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 188399 0.78 0.752448
Target:  5'- -aGUCGCUCucguccuGCGGGCGAGA-GGGCGAg -3'
miRNA:   3'- agCAGCGAG-------UGCUUGCUCUuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 105447 0.71 0.984226
Target:  5'- aCGUgGCg-ACGGACGAGAAcguGACGGc -3'
miRNA:   3'- aGCAgCGagUGCUUGCUCUUu--CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 6256 0.7 0.985971
Target:  5'- cUGUCGUgcggCGgGGACGAGAGGGAgcCGAc -3'
miRNA:   3'- aGCAGCGa---GUgCUUGCUCUUUCU--GCU- -5'
16013 3' -49.9 NC_004065.1 + 99266 0.66 0.999758
Target:  5'- cUCGUCgguguacuGCUCGCGGucgcccACGAcGAGGGGCa- -3'
miRNA:   3'- -AGCAG--------CGAGUGCU------UGCU-CUUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 226793 0.74 0.918983
Target:  5'- cCGUCGCUCugGAacaACGAauGAGACa- -3'
miRNA:   3'- aGCAGCGAGugCU---UGCUcuUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 151464 0.73 0.948712
Target:  5'- cUGUCGCUC-CGGA-GAGGGAGAgGAg -3'
miRNA:   3'- aGCAGCGAGuGCUUgCUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 175583 0.73 0.95284
Target:  5'- gCG-CGCgaacaGCGAGCGAGAggcuGAGGCGAa -3'
miRNA:   3'- aGCaGCGag---UGCUUGCUCU----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 118003 0.73 0.955593
Target:  5'- gUCGUCGUccUCGuCGGGCGAGAAacucuuguugucguAGGCGGc -3'
miRNA:   3'- -AGCAGCG--AGU-GCUUGCUCUU--------------UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 59448 0.71 0.975568
Target:  5'- gUCGUCGUgauccgCGCGAACGAGAccacguucgccAGGAUa- -3'
miRNA:   3'- -AGCAGCGa-----GUGCUUGCUCU-----------UUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 164866 0.71 0.982321
Target:  5'- uUUGaCGCUgACGAgccGCGAGcgGGACGAu -3'
miRNA:   3'- -AGCaGCGAgUGCU---UGCUCuuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 98740 0.71 0.978
Target:  5'- cCGUCGCUCACcaacccccgGAGgGAGAAGGcGCGc -3'
miRNA:   3'- aGCAGCGAGUG---------CUUgCUCUUUC-UGCu -5'
16013 3' -49.9 NC_004065.1 + 190793 0.72 0.963863
Target:  5'- gUCGUCGuCUCACuGAACaAGAucGAUGAu -3'
miRNA:   3'- -AGCAGC-GAGUG-CUUGcUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 97749 0.76 0.850738
Target:  5'- cCGgcUCGUUCAUGGACGAGAucauGGGCGGc -3'
miRNA:   3'- aGC--AGCGAGUGCUUGCUCUu---UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 180458 0.71 0.978
Target:  5'- cUCGUCGCgaugCACGGcuACGuGGccGGCGAu -3'
miRNA:   3'- -AGCAGCGa---GUGCU--UGCuCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 35677 0.76 0.873542
Target:  5'- aCGUCGCUCGCGAGCcagGAGAucGcgcgucGCGAc -3'
miRNA:   3'- aGCAGCGAGUGCUUG---CUCUuuC------UGCU- -5'
16013 3' -49.9 NC_004065.1 + 68102 0.73 0.956739
Target:  5'- -aGUCGCU-ACGGACGGuGAcucGAGACGAg -3'
miRNA:   3'- agCAGCGAgUGCUUGCU-CU---UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 130681 0.71 0.982321
Target:  5'- ---aCGCUCGuCGGGCGAG-GAGGCGGa -3'
miRNA:   3'- agcaGCGAGU-GCUUGCUCuUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 209195 0.7 0.985971
Target:  5'- cCGgCGCUUuccucgACGAcccuCGAGAAGGACGAu -3'
miRNA:   3'- aGCaGCGAG------UGCUu---GCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 133605 0.75 0.887672
Target:  5'- gCGUUGCgagCGCGAuuuCGAGgcGGACGAc -3'
miRNA:   3'- aGCAGCGa--GUGCUu--GCUCuuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 165233 0.73 0.948712
Target:  5'- ---aCGCUCACGGAUGGGGucAGGAUGGg -3'
miRNA:   3'- agcaGCGAGUGCUUGCUCU--UUCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.