miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16013 3' -49.9 NC_004065.1 + 176594 0.7 0.989013
Target:  5'- cCGUCGgUCG-GGGCGAGAAcGACGu -3'
miRNA:   3'- aGCAGCgAGUgCUUGCUCUUuCUGCu -5'
16013 3' -49.9 NC_004065.1 + 6256 0.7 0.985971
Target:  5'- cUGUCGUgcggCGgGGACGAGAGGGAgcCGAc -3'
miRNA:   3'- aGCAGCGa---GUgCUUGCUCUUUCU--GCU- -5'
16013 3' -49.9 NC_004065.1 + 190793 0.72 0.963863
Target:  5'- gUCGUCGuCUCACuGAACaAGAucGAUGAu -3'
miRNA:   3'- -AGCAGC-GAGUG-CUUGcUCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 133605 0.75 0.887672
Target:  5'- gCGUUGCgagCGCGAuuuCGAGgcGGACGAc -3'
miRNA:   3'- aGCAGCGa--GUGCUu--GCUCuuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 80676 0.69 0.994402
Target:  5'- cUGUCGCUCagcgaguugGCGAACGucaucuacGAGACGAg -3'
miRNA:   3'- aGCAGCGAG---------UGCUUGCucu-----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 109308 0.69 0.992585
Target:  5'- gUCGUCGUUUACGA-CGGagcuGAAagcGGGCGAg -3'
miRNA:   3'- -AGCAGCGAGUGCUuGCU----CUU---UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 105447 0.71 0.984226
Target:  5'- aCGUgGCg-ACGGACGAGAAcguGACGGc -3'
miRNA:   3'- aGCAgCGagUGCUUGCUCUUu--CUGCU- -5'
16013 3' -49.9 NC_004065.1 + 35677 0.76 0.873542
Target:  5'- aCGUCGCUCGCGAGCcagGAGAucGcgcgucGCGAc -3'
miRNA:   3'- aGCAGCGAGUGCUUG---CUCUuuC------UGCU- -5'
16013 3' -49.9 NC_004065.1 + 29845 0.69 0.992585
Target:  5'- gCGUCGUUC-CGAcCGAGGagcuGAGAUGGu -3'
miRNA:   3'- aGCAGCGAGuGCUuGCUCU----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 97749 0.76 0.850738
Target:  5'- cCGgcUCGUUCAUGGACGAGAucauGGGCGGc -3'
miRNA:   3'- aGC--AGCGAGUGCUUGCUCUu---UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 209195 0.7 0.985971
Target:  5'- cCGgCGCUUuccucgACGAcccuCGAGAAGGACGAu -3'
miRNA:   3'- aGCaGCGAG------UGCUu---GCUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 102905 0.7 0.989013
Target:  5'- cCGcCGC-CGCGAugGGGGAgaacuGGACGGc -3'
miRNA:   3'- aGCaGCGaGUGCUugCUCUU-----UCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 180458 0.71 0.978
Target:  5'- cUCGUCGCgaugCACGGcuACGuGGccGGCGAu -3'
miRNA:   3'- -AGCAGCGa---GUGCU--UGCuCUuuCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 59448 0.71 0.975568
Target:  5'- gUCGUCGUgauccgCGCGAACGAGAccacguucgccAGGAUa- -3'
miRNA:   3'- -AGCAGCGa-----GUGCUUGCUCU-----------UUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 175583 0.73 0.95284
Target:  5'- gCG-CGCgaacaGCGAGCGAGAggcuGAGGCGAa -3'
miRNA:   3'- aGCaGCGag---UGCUUGCUCU----UUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 226793 0.74 0.918983
Target:  5'- cCGUCGCUCugGAacaACGAauGAGACa- -3'
miRNA:   3'- aGCAGCGAGugCU---UGCUcuUUCUGcu -5'
16013 3' -49.9 NC_004065.1 + 184785 0.69 0.995165
Target:  5'- aCGaCGCg-ACGGGCgGAGGAGGACGGu -3'
miRNA:   3'- aGCaGCGagUGCUUG-CUCUUUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 102147 0.69 0.994402
Target:  5'- gUCGUCGaucucgggCACGGugagguaccugGCGAGgcAGACGAg -3'
miRNA:   3'- -AGCAGCga------GUGCU-----------UGCUCuuUCUGCU- -5'
16013 3' -49.9 NC_004065.1 + 33879 0.69 0.993545
Target:  5'- ---aUGUaCACGAACGAGGAGGAgGAc -3'
miRNA:   3'- agcaGCGaGUGCUUGCUCUUUCUgCU- -5'
16013 3' -49.9 NC_004065.1 + 175770 0.69 0.992585
Target:  5'- -gGUCGC---CGGACGGGAGAuGACGAu -3'
miRNA:   3'- agCAGCGaguGCUUGCUCUUU-CUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.